Mir-96-P2q

MirGeneDB ID

Cbr-Mir-96-P2q

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-790-1

Paralogues

Cbr-Mir-96-P2p Cbr-Mir-96-P3

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Ami-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bge-Mir-96-P2 Bta-Mir-96-P2 Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dma-Mir-96-P2-v2 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dpu-Mir-96-P2-v2 Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Eca-Mir-96-P2 Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Llo-Mir-96-P2-v2 Loc-Mir-96-P2 Mdo-Mir-96-P2 Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tur-Mir-96-P2 War-Mir-96-P2 Xtr-Mir-96-P2

Node of Origin (locus)

C. briggsae

Node of Origin (family)

Bilateria

Genome context
(CB4)

IV: 6048856-6048920 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P2q)

Mir-96-P3 IV: 6041106-6041167 [+] Ensembl
Mir-96-P2p IV: 6048235-6048292 [+] Ensembl
Mir-96-P2q IV: 6048856-6048920 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GUAAGUUUUUUAAAAAGUCCCUUCCGAUUGCUUGGCACUCGCGAACACCGCGAUCACUUCCAAUAUCGAUCCGCGGAGUUAGCCAGUGUCAACCAAAUGGAUGUUUGAGACUUGUCAUUCUUAAA

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Structure

        10        20          30        40        50        60  
GUAAGUUUUUUAAAAAGUCCCU--|   A   C        C  G   A     AUCACUUCC 
                        UCCG UUG UUGGCACU GC AAC CCGCG         \
                        AGGU AAC AACUGUGA CG UUG GGCGC         A
AAAUUCUUACUGUUCAGAGUUUGU^   A   C        C  A   A     CUAGCUAUA 
   120       110       100        90        80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Mature sequence

Cbr-Mir-96-P2q_5p

mirBase accession

MIMAT0004292

Sequence

0- CUUGGCACUCGCGAACACCGCG -22

Get sequence

Star sequence

Cbr-Mir-96-P2q_3p*

mirBase accession

None

Sequence

43- CGGAGUUAGCCAGUGUCAACCA -65

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