Mir-96-P3

MirGeneDB ID

Cbr-Mir-96-P3

Family name

MIR-96 (all species)

Seed

AUGGCAC

Species

Roundworm (Caenorhabditis briggsae)

MiRBase ID

cbr-mir-228

Paralogues

Cbr-Mir-96-P2p Cbr-Mir-96-P2q

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Ami-Mir-96-P3-v2 Asu-Mir-96-P3 Ava-Mir-96-P3y Ava-Mir-96-P3z Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Bta-Mir-96-P3-v2 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cfa-Mir-96-P3-v2 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cja-Mir-96-P3-v2 Cli-Mir-96-P3-v1 Cli-Mir-96-P3-v2 Cmi-Mir-96-P3-v1 Cmi-Mir-96-P3-v2 Cpi-Mir-96-P3-v1 Cpi-Mir-96-P3-v2 Cpo-Mir-96-P3-v1 Cpo-Mir-96-P3-v2 Csc-Mir-96-P3w Csc-Mir-96-P3x Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dno-Mir-96-P3-v2 Dpu-Mir-96-P3 Dre-Mir-96-P3a-v1 Dre-Mir-96-P3a-v2 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Ebu-Mir-96-P3e Ebu-Mir-96-P3f Eca-Mir-96-P3-v1 Eca-Mir-96-P3-v2 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Ete-Mir-96-P3-v2 Gga-Mir-96-P3-v1 Gga-Mir-96-P3-v2 Gja-Mir-96-P3-v1 Gja-Mir-96-P3-v2 Gmo-Mir-96-P3a-v1 Gmo-Mir-96-P3a-v2 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Hsa-Mir-96-P3-v2 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Loc-Mir-96-P3-v2 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v Mal-Mir-96-P3a-v1 Mal-Mir-96-P3a-v2 Mal-Mir-96-P3b-v1 Mal-Mir-96-P3b-v2 Mdo-Mir-96-P3-v1 Mdo-Mir-96-P3-v2 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mml-Mir-96-P3-v2 Mmr-Mir-96-P3-v1 Mmr-Mir-96-P3-v2 Mmu-Mir-96-P3-v1 Mmu-Mir-96-P3-v2 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Mun-Mir-96-P3-v2 Neu-Mir-96-P3-v1 Neu-Mir-96-P3-v2 Oan-Mir-96-P3-v1 Oan-Mir-96-P3-v2 Ocu-Mir-96-P3-v1 Ocu-Mir-96-P3-v2 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pab-Mir-96-P3-v2 Pau-Mir-96-P3g Pau-Mir-96-P3h Pbv-Mir-96-P3-v1 Pbv-Mir-96-P3-v2 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pma-Mir-96-P3o1 Pma-Mir-96-P3o2 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rno-Mir-96-P3-v2 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sha-Mir-96-P3-v2 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Sto-Mir-96-P3-v2 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tni-Mir-96-P3a Tni-Mir-96-P3b Tur-Mir-96-P3 War-Mir-96-P3 Xla-Mir-96-P3c-v1 Xla-Mir-96-P3c-v2 Xla-Mir-96-P3d-v1 Xla-Mir-96-P3d-v2 Xtr-Mir-96-P3-v1 Xtr-Mir-96-P3-v2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(CB4)

IV: 6041106-6041167 [+] Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3)

Mir-96-P3 IV: 6041106-6041167 [+] Ensembl
Mir-96-P2p IV: 6048235-6048292 [+] Ensembl
Mir-96-P2q IV: 6048856-6048920 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AUAUACAUAAAGGAAUCCCACCCUGUUCGCAAUGGCACUGCAUGAAUUCACGGAUGCAAAGCGACAGACCGCGGAUCAUGCGGUACCAUAGCUGACGGUGGUGAGAUCAGAUUAUUUGAAUC

Get precursor sequence

Structure

        10         20         30        40        50        60 
AUAUACAUAAAGGAAUCC-    -|    C  A    C         A   A   AUGCAAA 
                   CACC CUGUU GC AUGG ACUGCAUGA UUC CGG       \
                   GUGG GGCAG CG UACC UGGCGUACU AGG GCC       G
CUAAGUUUAUUAGACUAGA    U^    U  A    A         -   C   AGACAGC 
120       110       100        90        80         70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Ea	Ma	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Wh	Yo	Yo

Mature sequence

Cbr-Mir-96-P3_5p

mirBase accession

MIMAT0000495

Sequence

0- AAUGGCACUGCAUGAAUUCACGG -23

Get sequence

Star sequence

Cbr-Mir-96-P3_3p*

mirBase accession

None

Sequence

40- GCGGAUCAUGCGGUACCAUAGC -62

Get sequence