Mir-96-P3o1

MirGeneDB ID

Pma-Mir-96-P3o1

Family name

MIR-96 (all species)

Seed

AUGGCAC

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-183

Paralogues

Pma-Mir-96-P1o1 Pma-Mir-96-P1o2 Pma-Mir-96-P2o1 Pma-Mir-96-P3o2

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Ami-Mir-96-P3-v2 Asu-Mir-96-P3 Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Bta-Mir-96-P3-v2 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cfa-Mir-96-P3-v2 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cja-Mir-96-P3-v2 Cli-Mir-96-P3-v1 Cli-Mir-96-P3-v2 Cmi-Mir-96-P3-v1 Cmi-Mir-96-P3-v2 Cpi-Mir-96-P3-v1 Cpi-Mir-96-P3-v2 Cpo-Mir-96-P3-v1 Cpo-Mir-96-P3-v2 Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dno-Mir-96-P3-v2 Dpu-Mir-96-P3 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Eca-Mir-96-P3-v1 Eca-Mir-96-P3-v2 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Ete-Mir-96-P3-v2 Gga-Mir-96-P3-v1 Gga-Mir-96-P3-v2 Gja-Mir-96-P3-v1 Gja-Mir-96-P3-v2 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Hsa-Mir-96-P3-v2 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Loc-Mir-96-P3-v2 Mdo-Mir-96-P3-v1 Mdo-Mir-96-P3-v2 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mml-Mir-96-P3-v2 Mmr-Mir-96-P3-v1 Mmr-Mir-96-P3-v2 Mmu-Mir-96-P3-v1 Mmu-Mir-96-P3-v2 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Mun-Mir-96-P3-v2 Neu-Mir-96-P3-v1 Neu-Mir-96-P3-v2 Oan-Mir-96-P3-v1 Oan-Mir-96-P3-v2 Ocu-Mir-96-P3-v1 Ocu-Mir-96-P3-v2 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pab-Mir-96-P3-v2 Pbv-Mir-96-P3-v1 Pbv-Mir-96-P3-v2 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rno-Mir-96-P3-v1 Rno-Mir-96-P3-v2 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sha-Mir-96-P3-v2 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Sto-Mir-96-P3-v2 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tur-Mir-96-P3 War-Mir-96-P3 Xtr-Mir-96-P3-v1 Xtr-Mir-96-P3-v2

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046104.1: 2254548-2254609 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3o1)

Mir-96-P2o1 NC_046104.1: 2252108-2252170 [-] UCSC Ensembl
Mir-96-P1o1 NC_046104.1: 2252300-2252362 [-] UCSC Ensembl
Mir-96-P3o1 NC_046104.1: 2254548-2254609 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CCCGUCAUCACCACGGUGCCCCCCUCCGUCUAUGGCACUGGUAGAAUUCACUGUGUGGUUGUGGGUUCAGUGAAUUGCCAUCGGGCCAUACACGGCGCUGGGCUCGAGAACCUCGCUCCGCU

Get precursor sequence

Structure

        10          20        30        40         50        60
CCCGUCAUCACCACGGU--|   CCCU    C      A     AG-         UGUGGU 
                   GCCC    CCGU UAUGGC CUGGU   AAUUCACUG      U
                   CGGG    GGCA AUACCG GGCUA   UUAAGUGAC      G
UCGCCUCGCUCCAAGAGCU^   UCGC    C      -     CCG         UUGGGU 
120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-96-P3o1_5p

mirBase accession

MIMAT0019491

Sequence

0- UAUGGCACUGGUAGAAUUCACUG -23

Get sequence

Star sequence

Pma-Mir-96-P3o1_3p*

mirBase accession

MIMAT0019492

Sequence

39- GUGAAUUGCCAUCGGGCCAUACA -62

Get sequence