MirGeneDB 3.0

MirGeneDB ID

Pma-Mir-96-P1o1

Family name MIR-96 (all species)
Seed UUGGCAC
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-96a
Paralogues Pma-Mir-96-P1o2  Pma-Mir-96-P2o1  Pma-Mir-96-P3o1  Pma-Mir-96-P3o2 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)
NC_046104.1: 2252300-2252362 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1o1)
Mir-96-P2o1 NC_046104.1: 2252108-2252170 [-] UCSC Ensembl
Mir-96-P1o1 NC_046104.1: 2252300-2252362 [-] UCSC Ensembl
Mir-96-P3o1 NC_046104.1: 2254548-2254609 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACCUGGCAUGUGCAGUGCGUCUUACCCGCUUUGGCACUGGCACAUACUUGCUUCACUGUGAAACCCUGAGCAAUUAUGUGUAGUGCCGACUCGGGUAGAAUGCAGCGCGGCAGGGGGUGGGU
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Structure
        10          20        30        40        50        60 
UACCUGGCAUGUGCAGU--|   CU      CU         G      C     UCACUGU 
                   GCGU  UACCCG  UUGGCACUG CACAUA UUGCU       G
                   CGUA  AUGGGC  AGCCGUGAU GUGUAU AACGA       A
UGGGUGGGGGACGGCGCGA^   AG      UC         -      U     GUCCCAA 
 120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
 +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-96-P1o1_5p

mirBase accessionMIMAT0019436
Sequence
0- UUUGGCACUGGCACAUACUUGCU -23
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Star sequence

Pma-Mir-96-P1o1_3p* (predicted)

mirBase accessionNone
Sequence
41- CAAUUAUGUGUAGUGCCGACUC -63
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