Mir-96-P1o1

MirGeneDB ID

Pma-Mir-96-P1o1

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-96a

Paralogues

Pma-Mir-96-P1o2 Pma-Mir-96-P2o1 Pma-Mir-96-P3o1 Pma-Mir-96-P3o2

Orthologues

Ami-Mir-96-P1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Efe-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pbv-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

P. marinus

Node of Origin (family)

Bilateria

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046104.1: 2252300-2252362 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P1o1)

Mir-96-P2o1 NC_046104.1: 2252108-2252170 [-] UCSC Ensembl
Mir-96-P1o1 NC_046104.1: 2252300-2252362 [-] UCSC Ensembl
Mir-96-P3o1 NC_046104.1: 2254548-2254609 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UACCUGGCAUGUGCAGUGCGUCUUACCCGCUUUGGCACUGGCACAUACUUGCUUCACUGUGAAACCCUGAGCAAUUAUGUGUAGUGCCGACUCGGGUAGAAUGCAGCGCGGCAGGGGGUGGGU

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Structure

        10          20        30        40        50        60 
UACCUGGCAUGUGCAGU--|   CU      CU         G      C     UCACUGU 
                   GCGU  UACCCG  UUGGCACUG CACAUA UUGCU       G
                   CGUA  AUGGGC  AGCCGUGAU GUGUAU AACGA       A
UGGGUGGGGGACGGCGCGA^   AG      UC         -      U     GUCCCAA 
 120       110       100        90         80        70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Mature sequence

Pma-Mir-96-P1o1_5p

mirBase accession

MIMAT0019436

Sequence

0- UUUGGCACUGGCACAUACUUGCU -23

Get sequence

Star sequence

Pma-Mir-96-P1o1_3p* (predicted)

mirBase accession

None

Sequence

41- CAAUUAUGUGUAGUGCCGACUC -63

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