Mir-96-P3-v2

MirGeneDB ID

Rno-Mir-96-P3-v2

Family name

MIR-96 (all species)

Seed

UGGCACU

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-183

Paralogues

Rno-Mir-96-P1 Rno-Mir-96-P2 Rno-Mir-96-P3-v1

Orthologues

Aae-Mir-96-P3 Aga-Mir-96-P3 Agr-Mir-96-P3 Ami-Mir-96-P3-v1 Ami-Mir-96-P3-v2 Asu-Mir-96-P3 Ava-Mir-96-P3y Ava-Mir-96-P3z Bfl-Mir-96-P3 Bge-Mir-96-P3 Bko-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Bta-Mir-96-P3-v2 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cfa-Mir-96-P3-v2 Cin-Mir-96-P3 Cja-Mir-96-P3-v1 Cja-Mir-96-P3-v2 Cli-Mir-96-P3-v1 Cli-Mir-96-P3-v2 Cmi-Mir-96-P3-v1 Cmi-Mir-96-P3-v2 Cpi-Mir-96-P3-v1 Cpi-Mir-96-P3-v2 Cpo-Mir-96-P3-v1 Cpo-Mir-96-P3-v2 Csc-Mir-96-P3w Csc-Mir-96-P3x Cte-Mir-96-P3 Dan-Mir-96-P3 Dgr-Mir-96-P3 Dlo-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dno-Mir-96-P3-v2 Dpu-Mir-96-P3 Dre-Mir-96-P3a-v1 Dre-Mir-96-P3a-v2 Dsi-Mir-96-P3 Dya-Mir-96-P3 Eba-Mir-96-P3 Ebu-Mir-96-P3e Ebu-Mir-96-P3f Eca-Mir-96-P3-v1 Eca-Mir-96-P3-v2 Egr-Mir-96-P3 Ete-Mir-96-P3-v1 Ete-Mir-96-P3-v2 Gga-Mir-96-P3-v1 Gga-Mir-96-P3-v2 Gja-Mir-96-P3-v1 Gja-Mir-96-P3-v2 Gmo-Mir-96-P3a-v1 Gmo-Mir-96-P3a-v2 Gpa-Mir-96-P3 Gsp-Mir-96-P3 Hme-Mir-96-P3 Hru-Mir-96-P3 Hsa-Mir-96-P3-v1 Hsa-Mir-96-P3-v2 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Lhy-Mir-96-P3 Llo-Mir-96-P3 Loc-Mir-96-P3-v1 Loc-Mir-96-P3-v2 Lpo-Mir-96-P3r Lpo-Mir-96-P3s Lpo-Mir-96-P3t Lpo-Mir-96-P3u Lpo-Mir-96-P3v Mal-Mir-96-P3a-v1 Mal-Mir-96-P3a-v2 Mal-Mir-96-P3b-v1 Mal-Mir-96-P3b-v2 Mdo-Mir-96-P3-v1 Mdo-Mir-96-P3-v2 Mgi-Mir-96-P3 Mml-Mir-96-P3-v1 Mml-Mir-96-P3-v2 Mmr-Mir-96-P3-v1 Mmr-Mir-96-P3-v2 Mmu-Mir-96-P3-v1 Mmu-Mir-96-P3-v2 Mom-Mir-96-P3 Mun-Mir-96-P3-v1 Mun-Mir-96-P3-v2 Neu-Mir-96-P3-v1 Neu-Mir-96-P3-v2 Oan-Mir-96-P3-v1 Oan-Mir-96-P3-v2 Ocu-Mir-96-P3-v1 Ocu-Mir-96-P3-v2 Ofu-Mir-96-P3 Pab-Mir-96-P3-v1 Pab-Mir-96-P3-v2 Pau-Mir-96-P3g Pau-Mir-96-P3h Pbv-Mir-96-P3-v1 Pbv-Mir-96-P3-v2 Pca-Mir-96-P3 Pcr-Mir-96-P3 Pdu-Mir-96-P3 Pfl-Mir-96-P3 Pma-Mir-96-P3o1 Pma-Mir-96-P3o2 Pmi-Mir-96-P3 Pve-Mir-96-P3 Rph-Mir-96-P3 Sha-Mir-96-P3-v1 Sha-Mir-96-P3-v2 Sko-Mir-96-P3 Snu-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sro-Mir-96-P3 Sto-Mir-96-P3-v1 Sto-Mir-96-P3-v2 Tca-Mir-96-P3 Tgu-Mir-96-P3 Tni-Mir-96-P3a Tni-Mir-96-P3b Tur-Mir-96-P3 War-Mir-96-P3 Xla-Mir-96-P3c-v1 Xla-Mir-96-P3c-v2 Xla-Mir-96-P3d-v1 Xla-Mir-96-P3d-v2 Xtr-Mir-96-P3-v1 Xtr-Mir-96-P3-v2

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr4: 57463592-57463651 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P3-v2)

Mir-96-P2 chr4: 57459736-57459800 [-] UCSC Ensembl
Mir-96-P1 chr4: 57463385-57463448 [-] UCSC Ensembl
Mir-96-P3-v1 chr4: 57463591-57463652 [-] UCSC Ensembl
Mir-96-P3-v2 chr4: 57463592-57463651 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGGCCAGAGAGUGUGACUCCUGUCCUGUGUAUGGCACUGGUAGAAUUCACUGUGAACAGUCUCGGUCAGUGAAUUACCGAAGGGCCAUAAACAGAGCAGAGACAGAUCCGCGAGUGCUUC

Get precursor sequence

Structure

        10          20        30          40        50         
AGGCCAGAGAGUGUGAC-  -   UC    G      AC--|    GA        UGAACA 
                  UC CUG  CUGU UAUGGC    UGGUA  AUUCACUG      G
                  AG GAC  GACA AUACCG    GCCAU  UAAGUGAC      U
CUUCGUGAGCGCCUAGAC  A   GA    A      GGAA^    --        UGGCUC 
.       110       100        90        80          70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-96-P3-v2_5p

mirBase accession

MIMAT0000860

Sequence

0- AUGGCACUGGUAGAAUUCACUG -22

Get sequence

Proposed targets

microrna.org: MIMAT0000860
TargetScanVert: rno-miR-183-5p
miRDB: MIMAT0000860

Star sequence

Rno-Mir-96-P3-v2_3p*

mirBase accession

MIMAT0017141

Sequence

38- GUGAAUUACCGAAGGGCCAUAA -60

Get sequence

Proposed targets

TargetScanVert: rno-miR-183-3p
miRDB: MIMAT0017141