Mir-96-P3f

MirGeneDB ID

Ebu-Mir-96-P3f

Family name

MIR-96 (all species)

Seed

AUGGCAC

Species

Inshore hagfish (Eptatretus burgeri)

MiRBase ID

Paralogues

Ebu-Mir-96-P1e Ebu-Mir-96-P1f Ebu-Mir-96-P1g Ebu-Mir-96-P2e Ebu-Mir-96-P3e

Orthologues

Aae-Mir-96-P3 Ami-Mir-96-P3-v1 Ami-Mir-96-P3-v2 Asu-Mir-96-P3 Bfl-Mir-96-P3 Bge-Mir-96-P3 Bla-Mir-96-P3 Bpl-Mir-96-P3 Bta-Mir-96-P3-v1 Bta-Mir-96-P3-v2 Cbr-Mir-96-P3 Cel-Mir-96-P3 Cfa-Mir-96-P3-v1 Cfa-Mir-96-P3-v2 Cgi-Mir-96-P3 Cin-Mir-96-P3 Cli-Mir-96-P3-v1 Cli-Mir-96-P3-v2 Cmi-Mir-96-P3-v1 Cmi-Mir-96-P3-v2 Cpi-Mir-96-P3-v1 Cpi-Mir-96-P3-v2 Cpo-Mir-96-P3-v1 Cpo-Mir-96-P3-v2 Dan-Mir-96-P3 Dma-Mir-96-P3 Dme-Mir-96-P3 Dmo-Mir-96-P3 Dno-Mir-96-P3-v1 Dno-Mir-96-P3-v2 Dpu-Mir-96-P3 Dsi-Mir-96-P3 Dya-Mir-96-P3 Ete-Mir-96-P3-v1 Ete-Mir-96-P3-v2 Gga-Mir-96-P3-v1 Gga-Mir-96-P3-v2 Gja-Mir-96-P3-v1 Gja-Mir-96-P3-v2 Hme-Mir-96-P3 Hsa-Mir-96-P3-v1 Hsa-Mir-96-P3-v2 Isc-Mir-96-P3 Lan-Mir-96-P3 Lch-Mir-96-P3 Lgi-Mir-96-P3 Loc-Mir-96-P3-v1 Loc-Mir-96-P3-v2 Mdo-Mir-96-P3-v1 Mdo-Mir-96-P3-v2 Mml-Mir-96-P3-v1 Mml-Mir-96-P3-v2 Mmu-Mir-96-P3-v1 Mmu-Mir-96-P3-v2 Mun-Mir-96-P3-v1 Mun-Mir-96-P3-v2 Oan-Mir-96-P3-v1 Oan-Mir-96-P3-v2 Ocu-Mir-96-P3-v1 Ocu-Mir-96-P3-v2 Pbv-Mir-96-P3-v1 Pbv-Mir-96-P3-v2 Pfl-Mir-96-P3 Pmi-Mir-96-P3 Rno-Mir-96-P3-v1 Rno-Mir-96-P3-v2 Sha-Mir-96-P3-v1 Sha-Mir-96-P3-v2 Sko-Mir-96-P3 Spt-Mir-96-P3 Spu-Mir-96-P3 Sto-Mir-96-P3-v1 Sto-Mir-96-P3-v2 Tca-Mir-96-P3 Tgu-Mir-96-P3 Xtr-Mir-96-P3-v1 Xtr-Mir-96-P3-v2

Node of Origin (locus)

E. burgeri

Node of Origin (family)

Bilateria

Genome context
(Eburgeri_3)

FYBX02009661.1: 1101010-1101067 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CAUUACCUCUGUACGCAGUCUGGCCCUGUUUAUGGCACUGGUAGAAUUCACUGCACCUGGUCUCCAGUGAUCUACCACAGGCCAUUCACAGUGCUUGGCCCUCGCAGCACAAGCUCUU

Get precursor sequence

Structure

        10          20        30         40        50         
CAUUACCUCUGUACGCA--   U   C    UU     AC-|      AU      CACCU 
                   GUC GGC CUGU  AUGGC   UGGUAGA  UCACUG     \
                   CGG UCG GACA  UACCG   ACCAUCU  AGUGAC     G
UUCUCGAACACGACGCUCC   U   U    CU     GAC^      --      CUCUG 
      110       100        90        80          70        60

Deep sequencing

Go to detailed chart

3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Ebu-Mir-96-P3f_5p

mirBase accession

None

Sequence

0- UAUGGCACUGGUAGAAUUCACUG -23

Get sequence

Star sequence

Ebu-Mir-96-P3f_3p* (predicted)

mirBase accession

None

Sequence

36- GUGAUCUACCACAGGCCAUUCA -58

Get sequence