MirGeneDB 3.0
MirGeneDB ID

Ebu-Mir-96-P1f

Family name MIR-96 (all species)
Seed UUGGCAC
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-96-P1e  Ebu-Mir-96-P1g  Ebu-Mir-96-P2e  Ebu-Mir-96-P3e  Ebu-Mir-96-P3f 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) E. burgeri
Node of Origin (family) Bilateria
Genome context
(Eburgeri_3)		 FYBX02009661.1: 1087770-1087831 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGUGGUUUUUCUCCUCUGUCUGACCUCGUUUGGCACUUGCACAUACUUGCUAACAAGGCCAAUCUCAGCAGCUAUGUCACGUGCCAGGCAAGGCAGCCAGAAUUGCCAUCUUGGUGCGAG
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Structure
        10           20        30        40        50        60 
AUUGUGGUUUUUCUCCU---|  U   A   C         U  C     C     AACAAGG 
                    CUG CUG CCU GUUUGGCAC UG ACAUA UUGCU       \
                    GAC GAC GGA CGGACCGUG AC UGUAU GACGA       C
GAGCGUGGUUCUACCGUUAA^  C   -   A         C  -     C     CUCUAAC 
120       110       100         90        80         70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ebu-Mir-96-P1f_5p
mirBase accessionNone
Sequence 
0- UUUGGCACUUGCACAUACUUGCU -23
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Star sequence

Ebu-Mir-96-P1f_3p* (predicted)
mirBase accessionNone
Sequence 
40- CAGCUAUGUCACGUGCCAGGCA -62
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