MirGeneDB 3.0
MirGeneDB ID

Ebu-Mir-96-P1e

Family name MIR-96 (all species)
Seed UUGGCAC
Species Inshore hagfish (Eptatretus burgeri)
MiRBase ID
Paralogues Ebu-Mir-96-P1f  Ebu-Mir-96-P1g  Ebu-Mir-96-P2e  Ebu-Mir-96-P3e  Ebu-Mir-96-P3f 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) E. burgeri
Node of Origin (family) Bilateria
Genome context
(Eburgeri_3)		 FYBX02009823.1: 3449915-3449976 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGCAUCUCCCUGCGGUCCGCGUGUCCUCUUUGGCACUAGUACAUACUUGCUCGGUCCUUGUAUUUCAGCAACUAUGUUUGGUGCCAGAGCGGACGCCGGGGUUCAGCGUGGGGGAGGAGC
Get precursor sequence
Structure
        10           20        30        40        50        60 
AGUGCAUCUCCCUGCGG---|   C      U            U     C     CGGUCCU 
                    UCCG GUGUCC CUUUGGCACUAG ACAUA UUGCU       \
                    GGGC CGCAGG GAGACCGUGGUU UGUAU AACGA       U
CGAGGAGGGGGUGCGACUUG^   -      C            -     C     CUUUAUG 
120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsNo
Tissue expression
-   +
To
Mature sequence

Ebu-Mir-96-P1e_5p
mirBase accessionNone
Sequence 
0- UUUGGCACUAGUACAUACUUGCU -23
Get sequence
Star sequence

Ebu-Mir-96-P1e_3p* (predicted)
mirBase accessionNone
Sequence 
40- CAACUAUGUUUGGUGCCAGAGC -62
Get sequence