MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-96-P2j

Family name MIR-96 (all species)
Seed AGAAUUC
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-96-P1  Bla-Mir-96-P2f  Bla-Mir-96-P2g  Bla-Mir-96-P2h  Bla-Mir-96-P2i  Bla-Mir-96-P2k  Bla-Mir-96-P3 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Aga-Mir-96-P2  Agr-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Ava-Mir-96-o2  Bfl-Mir-96-P2j  Bge-Mir-96-P2  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cja-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dlo-Mir-96-P2  Dma-Mir-96-P2-v1  Dma-Mir-96-P2-v2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2-v1  Dpu-Mir-96-P2-v2  Dsi-Mir-96-P2  Dya-Mir-96-P2  Eba-Mir-96-P2  Eca-Mir-96-P2  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Gpa-Mir-96-P2  Hme-Mir-96-P2  Hru-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Laf-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Lhy-Mir-96-P2  Llo-Mir-96-P2-v1  Llo-Mir-96-P2-v2  Loc-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmr-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Neu-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ofu-Mir-96-P2  Ovu-Mir-96-P2  Pab-Mir-96-P2  Pau-Mir-96-P2  Pbv-Mir-96-P2  Pca-Mir-96-P2  Pdu-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Pve-Mir-96-P2  Rno-Mir-96-P2  Rph-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Snu-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Tur-Mir-96-P2  War-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)		 Sc0000146: 18961-19028 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUAUUGUCAAUGACACUGUGGGCUAGACUUCUUGGCACUAGUGGAGUUCUCUGUGUGUGUUGUAACAGAAGGAUCACAGAAUUCCCCAGUACCAAGGGGUCUGACCUGAAAUAGCUUACCAUCCACCU
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Structure
        10          20        30        40        50        60     
AUAUUGUCAAUGACACUGU--|  C            C   AGU     UC      UGUGUUGUA 
                     GGG UAGACUUCUUGG ACU   GGAGU  UCUGUG         \
                     UCC GUCUGGGGAACC UGA   CCUUA  AGACAC         A
UCCACCUACCAUUCGAUAAAG^  A            A   CC-     --      UAGGAAGAC 
      120       110       100        90           80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Ad Ad Em Em Em Em
Star sequence

Bla-Mir-96-P2j_5p*
mirBase accessionNone
Sequence 
0- CUUGGCACUAGUGGAGUUCUCUGUG -25
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Mature sequence

Bla-Mir-96-P2j_3p
mirBase accessionNone
Sequence 
46- CAGAAUUCCCCAGUACCAAGGG -68
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