MirGeneDB 2.1

MirGeneDB ID

Bfl-Mir-96-P2j

Family name MIR-96 (all species)
Seed AGAAUUC
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID
Paralogues Bfl-Mir-96-P1  Bfl-Mir-96-P2f  Bfl-Mir-96-P2g  Bfl-Mir-96-P2h  Bfl-Mir-96-P2i  Bfl-Mir-96-P2k  Bfl-Mir-96-P3 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Bge-Mir-96-P2  Bla-Mir-96-P2j  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dma-Mir-96-P2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2  Dsi-Mir-96-P2  Dya-Mir-96-P2  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Hme-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Loc-Mir-96-P2  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ovu-Mir-96-P2  Pbv-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Rno-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)
NC_049980.1: 17547417-17547484 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-96-P2j)
Mir-96-P2f NC_049980.1: 17527947-17528024 [-] UCSC
Mir-96-P2i NC_049980.1: 17547811-17547890 [-] UCSC
Mir-96-P2h NC_049980.1: 17548107-17548183 [-] UCSC
Precursor
(pre-Mir +30nt flank)
AUUUAUUCAAUGACACUGUGGGCUAGACUUCUUGGCACUGGUGGAGUUCUCUGUGUGUGUUGUAAUGGAAGGAUCACAGAAUUCCCCAGUACCAAGGGAUCUGGUCUGAAAUAACUUACCAUCCACCU
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Structure
        10          20        30        40        50        60    
AUUUAUUCAAUGACACUGU--|       CU      C     U        C  UGUGUGUUGU 
                     GGGCUAGA  UCUUGG ACUGG GGAGUUCU UG          \
                     UCUGGUCU  GGAACC UGACC CCUUAAGA AC          A
UCCACCUACCAUUCAAUAAAG^       AG      A     -        C  UAGGAAGGUA 
      120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
To
Star sequence

Bfl-Mir-96-P2j_5p* (predicted)

mirBase accessionNone
Sequence
0- CUUGGCACUGGUGGAGUUCUCUG -23
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Mature sequence

Bfl-Mir-96-P2j_3p

mirBase accessionNone
Sequence
46- CAGAAUUCCCCAGUACCAAGGG -68
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