Mir-96-P2j

MirGeneDB ID

Bfl-Mir-96-P2j

Family name

MIR-96 (all species)

Seed

AGAAUUC

Species

Florida lancelet (Branchiostoma floridae)

MiRBase ID

Paralogues

Bfl-Mir-96-P1 Bfl-Mir-96-P2f Bfl-Mir-96-P2g Bfl-Mir-96-P2h Bfl-Mir-96-P2i Bfl-Mir-96-P2k Bfl-Mir-96-P3

Orthologues

Aae-Mir-96-P2 Aca-Mir-96-P2 Aga-Mir-96-P2 Agr-Mir-96-P2 Ami-Mir-96-P2 Asu-Mir-96-P2 Ava-Mir-96-o2 Bge-Mir-96-P2 Bla-Mir-96-P2j Bta-Mir-96-P2 Cel-Mir-96-P2 Cfa-Mir-96-P2 Cin-Mir-96-P2 Cja-Mir-96-P2 Cli-Mir-96-P2 Cmi-Mir-96-P2 Cpi-Mir-96-P2 Cpo-Mir-96-P2 Cte-Mir-96-P2 Dan-Mir-96-P2 Dlo-Mir-96-P2 Dma-Mir-96-P2-v1 Dma-Mir-96-P2-v2 Dme-Mir-96-P2 Dno-Mir-96-P2 Dpu-Mir-96-P2-v1 Dpu-Mir-96-P2-v2 Dsi-Mir-96-P2 Dya-Mir-96-P2 Eba-Mir-96-P2 Eca-Mir-96-P2 Ete-Mir-96-P2 Gga-Mir-96-P2 Gja-Mir-96-P2 Gpa-Mir-96-P2 Hme-Mir-96-P2 Hru-Mir-96-P2 Hsa-Mir-96-P2 Isc-Mir-96-P2 Laf-Mir-96-P2 Lan-Mir-96-P2 Lch-Mir-96-P2 Lgi-Mir-96-P2 Lhy-Mir-96-P2 Llo-Mir-96-P2-v1 Llo-Mir-96-P2-v2 Loc-Mir-96-P2 Mdo-Mir-96-P2 Mml-Mir-96-P2 Mmr-Mir-96-P2 Mmu-Mir-96-P2 Mun-Mir-96-P2 Neu-Mir-96-P2 Npo-Mir-96-P2 Oan-Mir-96-P2 Obi-Mir-96-P2 Ocu-Mir-96-P2 Ofu-Mir-96-P2 Ovu-Mir-96-P2 Pab-Mir-96-P2 Pau-Mir-96-P2 Pbv-Mir-96-P2 Pca-Mir-96-P2 Pdu-Mir-96-P2 Pfl-Mir-96-P2 Pmi-Mir-96-P2 Pve-Mir-96-P2 Rno-Mir-96-P2 Rph-Mir-96-P2 Sha-Mir-96-P2 Sko-Mir-96-P2 Snu-Mir-96-P2 Spt-Mir-96-P2 Spu-Mir-96-P2 Sto-Mir-96-P2 Tca-Mir-96-P2 Tgu-Mir-96-P2 Tur-Mir-96-P2 War-Mir-96-P2 Xtr-Mir-96-P2

Node of Origin (locus)

Branchiostoma

Node of Origin (family)

Bilateria

Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)

NC_049980.1: 17547417-17547484 [-] UCSC

Clustered miRNAs
(< 50kb from Mir-96-P2j)

Mir-96-P2f NC_049980.1: 17527947-17528024 [-] UCSC
Mir-96-P2i NC_049980.1: 17547811-17547890 [-] UCSC
Mir-96-P2h NC_049980.1: 17548107-17548183 [-] UCSC

Precursor
(pre-Mir +30nt flank)

AUUUAUUCAAUGACACUGUGGGCUAGACUUCUUGGCACUGGUGGAGUUCUCUGUGUGUGUUGUAAUGGAAGGAUCACAGAAUUCCCCAGUACCAAGGGAUCUGGUCUGAAAUAACUUACCAUCCACCU

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Structure

        10          20        30        40        50        60    
AUUUAUUCAAUGACACUGU--|       CU      C     U        C  UGUGUGUUGU 
                     GGGCUAGA  UCUUGG ACUGG GGAGUUCU UG          \
                     UCUGGUCU  GGAACC UGACC CCUUAAGA AC          A
UCCACCUACCAUUCAAUAAAG^       AG      A     -        C  UAGGAAGGUA 
      120       110       100        90         80        70

Deep sequencing

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3' NTU

Unknown

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

To

Star sequence

Bfl-Mir-96-P2j_5p* (predicted)

mirBase accession

None

Sequence

0- CUUGGCACUGGUGGAGUUCUCUG -23

Get sequence

Mature sequence

Bfl-Mir-96-P2j_3p

mirBase accession

None

Sequence

46- CAGAAUUCCCCAGUACCAAGGG -68

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