MirGeneDB 3.0

MirGeneDB ID

Gmo-Mir-96-P2a

Family name MIR-96 (all species)
Seed UUGGCAA
Species Cod (Gadus morhua)
MiRBase ID gmo-mir-182
Paralogues Gmo-Mir-96-P1a  Gmo-Mir-96-P3a-v1  Gmo-Mir-96-P3a-v2 
Orthologues Aae-Mir-96-P2  Aca-Mir-96-P2  Aga-Mir-96-P2  Agr-Mir-96-P2  Ami-Mir-96-P2  Asu-Mir-96-P2  Ava-Mir-96-o2  Bge-Mir-96-P2  Bta-Mir-96-P2  Cel-Mir-96-P2  Cfa-Mir-96-P2  Cin-Mir-96-P2  Cja-Mir-96-P2  Cli-Mir-96-P2  Cmi-Mir-96-P2  Cpi-Mir-96-P2  Cpo-Mir-96-P2  Cte-Mir-96-P2  Dan-Mir-96-P2  Dlo-Mir-96-P2  Dma-Mir-96-P2-v1  Dma-Mir-96-P2-v2  Dme-Mir-96-P2  Dno-Mir-96-P2  Dpu-Mir-96-P2-v1  Dpu-Mir-96-P2-v2  Dre-Mir-96-P2a  Dsi-Mir-96-P2  Dya-Mir-96-P2  Eba-Mir-96-P2  Eca-Mir-96-P2  Ete-Mir-96-P2  Gga-Mir-96-P2  Gja-Mir-96-P2  Gpa-Mir-96-P2  Hme-Mir-96-P2  Hru-Mir-96-P2  Hsa-Mir-96-P2  Isc-Mir-96-P2  Laf-Mir-96-P2  Lan-Mir-96-P2  Lch-Mir-96-P2  Lgi-Mir-96-P2  Lhy-Mir-96-P2  Llo-Mir-96-P2-v1  Llo-Mir-96-P2-v2  Loc-Mir-96-P2  Mal-Mir-96-P2a  Mdo-Mir-96-P2  Mml-Mir-96-P2  Mmr-Mir-96-P2  Mmu-Mir-96-P2  Mun-Mir-96-P2  Neu-Mir-96-P2  Npo-Mir-96-P2  Oan-Mir-96-P2  Obi-Mir-96-P2  Ocu-Mir-96-P2  Ofu-Mir-96-P2  Ovu-Mir-96-P2  Pab-Mir-96-P2  Pau-Mir-96-P2  Pbv-Mir-96-P2  Pca-Mir-96-P2  Pdu-Mir-96-P2  Pfl-Mir-96-P2  Pmi-Mir-96-P2  Pve-Mir-96-P2  Rno-Mir-96-P2  Rph-Mir-96-P2  Sha-Mir-96-P2  Sko-Mir-96-P2  Snu-Mir-96-P2  Spt-Mir-96-P2  Spu-Mir-96-P2  Sto-Mir-96-P2  Tca-Mir-96-P2  Tgu-Mir-96-P2  Tni-Mir-96-P2a  Tur-Mir-96-P2  War-Mir-96-P2  Xtr-Mir-96-P2 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Gadus_morhua.gadMor1.dna.toplevel)
GeneScaffold_4098: 13679-13743 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P2a)
Mir-96-P3a-v1 GeneScaffold_4098: 12669-12730 [+] UCSC Ensembl
Mir-96-P3a-v2 GeneScaffold_4098: 12670-12729 [+] UCSC Ensembl
Mir-96-P1a GeneScaffold_4098: 12976-13039 [+] UCSC Ensembl
Mir-96-P2a GeneScaffold_4098: 13679-13743 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUCGUCUCAGAAGCUGCUCUCUGGCGGUAUUUGGCAAUGGUAGAACUCACACUGGUGAGCUAGAAGGAUCCGGUGGUUCUAGACUUGCCAACUACCGCUCUGGGUCUAAGCUCCGACACAGAGG
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Structure
        10         20         30        40        50        60  
GGUCGUCUCAGAAGCUGCU-   U-|      U       UGG      U   ACUGGUGAGC 
                    CUC  GGCGGUA UUGGCAA   UAGAAC CAC          U
                    GGG  UCGCCAU AACCGUU   AUCUUG GUG          A
GGAGACACAGCCUCGAAUCU   UC^      C       CAG      -   GCCUAGGAAG 
   120       110       100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Gi He In Li Sk Sp Wh
Mature sequence

Gmo-Mir-96-P2a_5p

mirBase accessionMIMAT0044265
Sequence
0- UUUGGCAAUGGUAGAACUCACACU -24
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Star sequence

Gmo-Mir-96-P2a_3p*

mirBase accessionMIMAT0044266
Sequence
44- UGGUUCUAGACUUGCCAACUA -65
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