Mir-96-P1a

MirGeneDB ID

Gmo-Mir-96-P1a

Family name

MIR-96 (all species)

Seed

UUGGCAC

Species

Cod (Gadus morhua)

MiRBase ID

gmo-mir-96

Paralogues

Gmo-Mir-96-P2a Gmo-Mir-96-P3a-v1 Gmo-Mir-96-P3a-v2

Orthologues

Ami-Mir-96-P1 Ava-Mir-96-o1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cja-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Dre-Mir-96-P1a Eba-Mir-96-P1 Eca-Mir-96-P1 Efe-Mir-96-P1 Egr-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Laf-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lhy-Mir-96-P1 Llo-Mir-96-P1 Loc-Mir-96-P1 Mal-Mir-96-P1a Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmr-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Neu-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pab-Mir-96-P1 Pau-Mir-96-P1 Pbv-Mir-96-P1 Pca-Mir-96-P1 Pcr-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Sma-Mir-96-P1 Snu-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sro-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Tni-Mir-96-P1a War-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(Gadus_morhua.gadMor1.dna.toplevel)

GeneScaffold_4098: 12976-13039 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-96-P1a)

Mir-96-P3a-v1 GeneScaffold_4098: 12669-12730 [+] UCSC Ensembl
Mir-96-P3a-v2 GeneScaffold_4098: 12670-12729 [+] UCSC Ensembl
Mir-96-P1a GeneScaffold_4098: 12976-13039 [+] UCSC Ensembl
Mir-96-P2a GeneScaffold_4098: 13679-13743 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

CUCGACAACUCCCUCUUCUUCUUUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUAUAUACUUUGAGCAAUUAUGUGUGGUGCCAAUAUGGGACGAGACAGUCUUGCAACUGUGGCGUA

Get precursor sequence

Structure

        10          20        30        40        50        60  
CUCGACAACUCCCUCUUCU--|   UG     U         G     UU     UCUGUAUA 
                     UCUU  CCCAU UUGGCACUA CACAU  UUGCU        \
                     AGAG  GGGUA AACCGUGGU GUGUA  AACGA        U
AUGCGGUGUCAACGUUCUGAC^   CA     U         -     UU     GUUUCAUA 
  120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Br	Gi	He	In	Li	Sk	Sp	Wh

Mature sequence

Gmo-Mir-96-P1a_5p

mirBase accession

MIMAT0044263

Sequence

0- UUUGGCACUAGCACAUUUUUGCU -23

Get sequence

Star sequence

Gmo-Mir-96-P1a_3p*

mirBase accession

MIMAT0044264

Sequence

42- CAAUUAUGUGUGGUGCCAAUAU -64

Get sequence