MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-96-P1a

Family name MIR-96 (all species)
Seed UUGGCAC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-96
Paralogues Tni-Mir-96-P1b  Tni-Mir-96-P2a  Tni-Mir-96-P2b  Tni-Mir-96-P3a  Tni-Mir-96-P3b 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Dre-Mir-96-P1a  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Gmo-Mir-96-P1a  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mal-Mir-96-P1a  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 19: 3385392-3385455 [-] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1a)		 Mir-96-P2a 19: 3385158-3385222 [-] UCSC Ensembl
Mir-96-P1a 19: 3385392-3385455 [-] UCSC Ensembl
Mir-96-P3a 19: 3385640-3385701 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGGCCCGGGCGCUCCUCUUCUUUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUAUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGAGAAGACAGACUUUCACCUUUAGCCCU
Get precursor sequence
Structure
        10          20        30        40        50        60  
AUGGCCCGGGCGCUCCU-  -|   UG  C  U         G     UU     UCUGUAUA 
                  CU UCUU  CC AU UUGGCACUA CACAU  UUGCU        \
                  GA AGAA  GG UA AACCGUGAU GUGUA  AACGA        U
UCCCGAUUUCCACUUUCA  C^   GA  A  U         -     UU     GUUUCAUA 
  120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-96-P1a_5p
mirBase accessionMIMAT0003092
Sequence 
0- UUUGGCACUAGCACAUUUUUGCU -23
Get sequence
Star sequence

Tni-Mir-96-P1a_3p* (predicted)
mirBase accessionNone
Sequence 
42- CAAUUAUGUGUAGUGCCAAUAU -64
Get sequence