MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-96-P1b

Family name MIR-96 (all species)
Seed UUGGCAC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues Tni-Mir-96-P1a  Tni-Mir-96-P2a  Tni-Mir-96-P2b  Tni-Mir-96-P3a  Tni-Mir-96-P3b 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mal-Mir-96-P1b  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 13: 5039982-5040043 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCCGCUCCUGGUCAACUCCUUCGCCCAUUUUGGCACUAGCACAUUUUUGUUUCGUUUCUGGCUGUCAGCAAUCGUGUGCAGUGCCAAUCUAGGACAAGAGAGGCGCUCGGCUUUCCUCCG
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Structure
        10         20         30        40        50        60 
UCUCCGCUCCUGGUCAA-   -|  CG  CAUU        A      UU     UCGUUUC 
                  CUC CUU  CC    UUGGCACU GCACAU  UUGUU       \
                  GAG GAA  GG    AACCGUGA CGUGUG  AACGA       U
GCCUCCUUUCGGCUCGCG   A^  CA  AUCU        -      CU     CUGUCGG 
120       110       100        90         80        70
Deep sequencing
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3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Mature sequence

Tni-Mir-96-P1b_5p
mirBase accessionNone
Sequence 
0- UUUGGCACUAGCACAUUUUUGUU -23
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Star sequence

Tni-Mir-96-P1b_3p* (predicted)
mirBase accessionNone
Sequence 
40- CAAUCGUGUGCAGUGCCAAUCU -62
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