MirGeneDB 3.0
MirGeneDB ID

Mal-Mir-96-P1b

Family name MIR-96 (all species)
Seed UUGGCAC
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-96-P1a  Mal-Mir-96-P2a  Mal-Mir-96-P2b  Mal-Mir-96-P3a-v1  Mal-Mir-96-P3a-v2  Mal-Mir-96-P3b-v1  Mal-Mir-96-P3b-v2 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Tni-Mir-96-P1b  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)		 KV884693.1: 181154-181217 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUAACAUGUUUACAUCUUCUUUGCCCAUUUUGGCACUAGCACAUUUUUGCUUUGCUUCUUAUUGUUUGGGCAAUCAUGUGUAGUGCCAUUAUAGGACAAGACAGUCACUCAGCUGUUCAUAU
Get precursor sequence
Structure
        10          20        30        40        50        60  
AUCUAACAUGUUUACAUCU--|   UG  C  UU        G     UU     UUGCUUCU 
                     UCUU  CC AU  UGGCACUA CACAU  UUGCU        \
                     AGAA  GG UA  ACCGUGAU GUGUA  AACGG        U
UAUACUUGUCGACUCACUGAC^   CA  A  UU        -     CU     GUUUGUUA 
  120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-96-P1b_5p
mirBase accessionNone
Sequence 
0- UUUGGCACUAGCACAUUUUUGCU -23
Get sequence
Star sequence

Mal-Mir-96-P1b_3p* (predicted)
mirBase accessionNone
Sequence 
42- CAAUCAUGUGUAGUGCCAUUAU -64
Get sequence