MirGeneDB ID | Mal-Mir-96-P1a |
Family name |
MIR-96 (all species) |
Seed |
UUGGCAC |
Species |
Asian swamp eel (Monopterus albus) |
MiRBase ID |
|
Paralogues |
Mal-Mir-96-P1b
Mal-Mir-96-P2a
Mal-Mir-96-P2b
Mal-Mir-96-P3a-v1
Mal-Mir-96-P3a-v2
Mal-Mir-96-P3b-v1
Mal-Mir-96-P3b-v2
|
Orthologues |
Ami-Mir-96-P1
Bfl-Mir-96-P1
Bla-Mir-96-P1
Bta-Mir-96-P1
Cfa-Mir-96-P1
Cin-Mir-96-P1
Cli-Mir-96-P1
Cmi-Mir-96-P1
Cpi-Mir-96-P1
Cpo-Mir-96-P1
Cte-Mir-96-P1
Dno-Mir-96-P1
Dre-Mir-96-P1a
Efe-Mir-96-P1
Ete-Mir-96-P1
Gga-Mir-96-P1
Gja-Mir-96-P1
Gmo-Mir-96-P1a
Hsa-Mir-96-P1
Isc-Mir-96-P1
Lan-Mir-96-P1
Lch-Mir-96-P1
Loc-Mir-96-P1
Mdo-Mir-96-P1
Mml-Mir-96-P1
Mmu-Mir-96-P1
Mun-Mir-96-P1
Oan-Mir-96-P1
Ocu-Mir-96-P1
Pbv-Mir-96-P1
Pfl-Mir-96-P1
Pmi-Mir-96-P1
Rno-Mir-96-P1
Sha-Mir-96-P1
Sko-Mir-96-P1
Spt-Mir-96-P1
Spu-Mir-96-P1
Sto-Mir-96-P1
Tgu-Mir-96-P1
Tni-Mir-96-P1a
Xbo-Mir-96-P1
Xtr-Mir-96-P1
|
Node of Origin (locus) |
Clupeocephala
|
Node of Origin (family) |
Bilateria
|
Genome context (GCA_001952655.1_M_albus_1.0_genomic) |
KV884729.1: 3066031-3066094 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGUCCCAGCCACUCCUCUUCUUUGCCCAUUUUGGCACUAGCACAUUUUUGCUUCUGUAUGUAUACUUUGAGCAAUUAUGUGUAGUGCCAAUAUAGGACAAGACAGACUUCCAUCACUUUUGCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUGUCCCAGCCACUCCU- -| UG C U G UU UCUGUAUG
CU UCUU CC AU UUGGCACUA CACAU UUGCU \
GA AGAA GG UA AACCGUGAU GUGUA AACGA U
ACGUUUUCACUACCUUCA C^ CA A U - UU GUUUCAUA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Mal-Mir-96-P1a_5p |
mirBase accession | None |
Sequence |
0- UUUGGCACUAGCACAUUUUUGCU -23
Get sequence
|
Star sequence |
Mal-Mir-96-P1a_3p* |
mirBase accession | None |
Sequence |
42- CAAUUAUGUGUAGUGCCAAUAU -64
Get sequence
|