MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-96-P1a

Family name MIR-96 (all species)
Seed UUGGCAC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-96
Paralogues Dre-Mir-96-P2a  Dre-Mir-96-P3a-v1  Dre-Mir-96-P3a-v2 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Gmo-Mir-96-P1a  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mal-Mir-96-P1a  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  Tni-Mir-96-P1a  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr4: 15074738-15074801 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-96-P1a)		 Mir-96-P3a-v1 chr4: 15074581-15074642 [+] UCSC Ensembl
Mir-96-P3a-v2 chr4: 15074582-15074641 [+] UCSC Ensembl
Mir-96-P1a chr4: 15074738-15074801 [+] UCSC Ensembl
Mir-96-P2a chr4: 15075668-15075732 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UGGUCGAGCUGGGCGCUCUUCUUUGCCUGUUUUGGCACUAGCACAUUUUUGCUUUUUUAUAUAUACCUUGAGCAAUUAUGUGUAGUGCCAAUAUGGGACAAGACAGACAUGCUACUUAAAAAAA
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Structure
        10          20        30        40        50        60  
UGGUCGAGCUGGGCGCU-  -|   UG     U         G     UU     UUUUUAUA 
                  CU UCUU  CCUGU UUGGCACUA CACAU  UUGCU        \
                  GA AGAA  GGGUA AACCGUGAU GUGUA  AACGA        U
AAAAAAAUUCAUCGUACA  C^   CA     U         -     UU     GUUCCAUA 
  120       110       100        90         80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Mature sequence

Dre-Mir-96-P1a_5p
mirBase accessionMIMAT0001811
Sequence 
0- UUUGGCACUAGCACAUUUUUGCU -23
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Proposed targets TargetScanFish: dre-miR-96
Star sequence

Dre-Mir-96-P1a_3p*
mirBase accessionMIMAT0031956
Sequence 
42- CAAUUAUGUGUAGUGCCAAUAU -64
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