MirGeneDB ID | Npo-Mir-96-P1i |
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Family name | MIR-96 (all species) |
Seed | UUGGCAC |
Species | Chambered Nautilus (Nautilus pompilius) |
MiRBase ID | |
Paralogues | Npo-Mir-96-P1h Npo-Mir-96-P2 |
Orthologues | Ami-Mir-96-P1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cgi-Mir-96-P1i Cin-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Efe-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lgi-Mir-96-P1i Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pbv-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1 |
Node of Origin (locus) | Mollusca |
Node of Origin (family) | Bilateria |
Genome context (GCA_018389105_NPO) |
JACATO010000647.1: 143522-143579 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | UUUUUUCAGGAGAUGAGCUUGAUUAUCGGCCUUGGCACUGGCGGAAUAAUCACGUGAUAAGACUGUGAUUAUUUUCCGGUGCCAAAGUCAAAAAGCAGGCACCACAGCAUUGAUGGAAGet precursor sequence |
Structure | 10 20 30 40 50 UUUUUUCAGGAGAUGAG--| AUUAUC C C GUGAU CUUG GGC UUGGCACUGG GGAAUAAUCAC \ GGAC CUG AACCGUGGCC UUUUAUUAGUG A AAGGUAGUUACGACACCAC^ GAAAAA A - UCAGA 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | CNNC at 3p(+17), UGUG in loop |
Mature sequence | Npo-Mir-96-P1i_5p (predicted) |
mirBase accession | None |
Sequence |
0- CUUGGCACUGGCGGAAUAAUCAC -23
Get sequence
|
Star sequence | Npo-Mir-96-P1i_3p* (predicted) |
mirBase accession | None |
Sequence |
36- GAUUAUUUUCCGGUGCCAAAGU -58
Get sequence
|