MirGeneDB 3.0
MirGeneDB ID

Esc-Mir-96-P1i

Family name MIR-96 (all species)
Seed AUUUGGC
Species Hawaiian bobtail squid (Euprymna scolopes)
MiRBase ID
Paralogues
Orthologues Agr-Mir-96-P1i  Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hru-Mir-96-P1i  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lgi-Mir-96-P1i  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mgi-Mir-96-P1i  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mom-Mir-96-P1i  Mun-Mir-96-P1  Neu-Mir-96-P1  Npo-Mir-96-P1i  Oan-Mir-96-P1  Ocu-Mir-96-P1  Ovu-Mir-96-P1i  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Pve-Mir-96-P1i  Rno-Mir-96-P1  Rph-Mir-96-P1i  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) Mollusca
Node of Origin (family) Bilateria
Genome context
(GCA_004765925.1_miRNA_LOCI)		 Esc-Mir-96-P1h_pre_SRIE01034545.1:14764-15024: 101-161 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAAUUUUGAAGAAUUGAUGCUUGCUACUUAUUUGGCACUUGUGGAAUAAUCUUCACUUUCUUUUAGAUUAUACACCGGUGCCAAGUAAAAAGCGAGGCUCGAUAACGACACUUUGAUUA
Get precursor sequence
Structure
        10          20         30        40        50        60
AGGAAUUUUGAAGAAUU--| U    -   AC            U   GA      UUCACU 
                   GA GCUU GCU  UUAUUUGGCACU GUG  AUAAUC      U
                   CU CGGA CGA  AAUGAACCGUGG CAC  UAUUAG      U
AUUAGUUUCACAGCAAUAG^ -    G   AA            C   A-      AUUUUC 
 .       110        100        90        80         70
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ce Li
Mature sequence

Esc-Mir-96-P1i_5p
mirBase accessionNone
Sequence 
0- UAUUUGGCACUUGUGGAAUAAUC -23
Get sequence
Star sequence

Esc-Mir-96-P1i_3p* (predicted)
mirBase accessionNone
Sequence 
39- UUAUACACCGGUGCCAAGUAAA -61
Get sequence