MirGeneDB 3.0
MirGeneDB ID

Gsa-Mir-96-P1z

Family name MIR-96 (all species)
Seed UUGGCAC
Species Russian doll killer (Gyrodactylus salaris)
MiRBase ID gsa-mir-96b
Paralogues Gsa-Mir-96-P1y 
Orthologues Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mun-Mir-96-P1  Neu-Mir-96-P1  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) G. salaris
Node of Origin (family) Bilateria
Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)		 scf7180006953022: 74128-74183 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AAAGAUUAAUCUCAUUAAAGAUUACUACUCCUUGGCACAUUGGAAUUGGCACCAAAUCCAAAGUGGCAAAUUCAAUGUGACAAAUAGUAUUUAUCUAUUGUCUGCUCAAACUAAAA
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Structure
        10          20        30        40        50       
AAAGAUUAAUCUCAUUAA--|   UAC    CC   G         A   G   CAAA 
                    AGAU   UACU  UUG CACAUUGGA UUG CAC    U
                    UCUA   AUGA  AAC GUGUAACUU AAC GUG    C
AAAAUCAAACUCGUCUGUUA^   UUU    UA   A         A   G   AAAC 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Gs
Mature sequence

Gsa-Mir-96-P1z_5p
mirBase accessionMIMAT0035270
Sequence 
0- CUUGGCACAUUGGAAUUGGCAC -22
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Star sequence

Gsa-Mir-96-P1z_3p*
mirBase accessionMIMAT0035271
Sequence 
34- GGCAAAUUCAAUGUGACAAAUA -56
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