MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-96-P1h

Family name MIR-96 (all species)
Seed UUGGCAC
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-96-P1i  Rph-Mir-96-P2  Rph-Mir-96-P3 
Orthologues Agr-Mir-96-P1h  Ami-Mir-96-P1  Ava-Mir-96-o1  Bfl-Mir-96-P1  Bla-Mir-96-P1  Bta-Mir-96-P1  Cfa-Mir-96-P1  Cin-Mir-96-P1  Cja-Mir-96-P1  Cli-Mir-96-P1  Cmi-Mir-96-P1  Cpi-Mir-96-P1  Cpo-Mir-96-P1  Cte-Mir-96-P1  Dno-Mir-96-P1  Eba-Mir-96-P1  Eca-Mir-96-P1  Efe-Mir-96-P1  Egr-Mir-96-P1  Ete-Mir-96-P1  Gga-Mir-96-P1  Gja-Mir-96-P1  Hru-Mir-96-P1h  Hsa-Mir-96-P1  Isc-Mir-96-P1  Laf-Mir-96-P1  Lan-Mir-96-P1  Lch-Mir-96-P1  Lgi-Mir-96-P1h  Lhy-Mir-96-P1  Llo-Mir-96-P1  Loc-Mir-96-P1  Mdo-Mir-96-P1  Mgi-Mir-96-P1h  Mml-Mir-96-P1  Mmr-Mir-96-P1  Mmu-Mir-96-P1  Mom-Mir-96-P1h  Mun-Mir-96-P1  Neu-Mir-96-P1  Npo-Mir-96-P1h  Oan-Mir-96-P1  Ocu-Mir-96-P1  Pab-Mir-96-P1  Pau-Mir-96-P1  Pbv-Mir-96-P1  Pca-Mir-96-P1  Pcr-Mir-96-P1  Pfl-Mir-96-P1  Pmi-Mir-96-P1  Pve-Mir-96-P1h  Rno-Mir-96-P1  Sha-Mir-96-P1  Sko-Mir-96-P1  Sma-Mir-96-P1  Snu-Mir-96-P1  Spt-Mir-96-P1  Spu-Mir-96-P1  Sro-Mir-96-P1  Sto-Mir-96-P1  Tgu-Mir-96-P1  War-Mir-96-P1  Xbo-Mir-96-P1  Xtr-Mir-96-P1 
Node of Origin (locus) Mollusca
Node of Origin (family) Bilateria
Genome context
(Ruditapes_GCA_009026015)		 CM018532.1: 37520691-37520749 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAGAUGUGGAGGACUUGGGCAGUCUUGUCUUGGCACUGGCGGAAUAAUCACGUAACUGGCACUGUGGUUGUUCUCUGGUGUCAAAAUUAGACUGUUGCUGUGGCAACAUUACAGAAG
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Structure
        10          20        30        40        50         
AAGAGAUGUGGAGGACUUG--|       U  C       UG C           GUAAC 
                     GGCAGUCU GU UUGGCAC  G GGAAUAAUCAC     U
                     UUGUCAGA UA AACUGUG  C UCUUGUUGGUG     G
GAAGACAUUACAACGGUGUCG^       U  A       GU -           UCACG 
       110       100        90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Mature sequence

Rph-Mir-96-P1h_5p
mirBase accessionNone
Sequence 
0- CUUGGCACUGGCGGAAUAAUCAC -23
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Star sequence

Rph-Mir-96-P1h_3p*
mirBase accessionNone
Sequence 
37- GGUUGUUCUCUGGUGUCAAAAU -59
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