MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-1992

Family name MIR-1992 (all species)
Seed CAGCAGU
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1992  Cte-Mir-1992  Dgr-Mir-1992  Eba-Mir-1992  Efe-Mir-1992-P3  Efe-Mir-1992-P4  Egr-Mir-1992  Esc-Mir-1992  Gsa-Mir-1992  Hru-Mir-1992  Lan-Mir-1992  Lgi-Mir-1992-P1  Lgi-Mir-1992-P2  Llo-Mir-1992  Mgi-Mir-1992  Mom-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ofu-Mir-1992  Ovu-Mir-1992  Pau-Mir-1992  Pcr-Mir-1992  Pdu-Mir-1992  Pve-Mir-1992  Sma-Mir-1992  Sme-Mir-1992-P5  Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2  Snu-Mir-1992  War-Mir-1992 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(Ruditapes_GCA_009026015)		 CM018537.1: 21686874-21686934 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
GAUUUUAGCACUAAUCUUAUGUCUACUGUAAGUCAGUGGUGGGCUGUUUGGUACUUGUACUAUGCUUAUCAGCAGUUGUACCACUGAUUUGUAGUGGAUAUACCUAACAGCAUGCCAUUUU
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Structure
        10          20        30        40         50          
GAUUUUAGCACUAAUCU--                        -|      U    CUUGUA 
                   UAUGUCUACUGUAAGUCAGUGGUG GGCUGUU GGUA      \
                   AUAUAGGUGAUGUUUAGUCACCAU UUGACGA CUAU      C
UUUUACCGUACGACAAUCC                        G^      -    UCGUAU 
 .       110       100        90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Rph-Mir-1992_5p*
mirBase accessionNone
Sequence 
0- AGUCAGUGGUGGGCUGUUUGGUA -23
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Mature sequence

Rph-Mir-1992_3p
mirBase accessionNone
Sequence 
38- UCAGCAGUUGUACCACUGAUUUG -61
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