MirGeneDB ID | Rph-Mir-1992 |
Family name |
MIR-1992 (all species) |
Seed |
CAGCAGU |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
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Paralogues |
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Orthologues |
Agr-Mir-1992
Cte-Mir-1992
Dgr-Mir-1992
Eba-Mir-1992
Efe-Mir-1992-P3
Efe-Mir-1992-P4
Egr-Mir-1992
Esc-Mir-1992
Gsa-Mir-1992
Hru-Mir-1992
Lan-Mir-1992
Lgi-Mir-1992-P1
Lgi-Mir-1992-P2
Llo-Mir-1992
Mgi-Mir-1992
Mom-Mir-1992
Npo-Mir-1992
Obi-Mir-1992
Ofu-Mir-1992
Ovu-Mir-1992
Pau-Mir-1992
Pcr-Mir-1992
Pdu-Mir-1992
Pve-Mir-1992
Sma-Mir-1992
Sme-Mir-1992-P5
Sme-Mir-1992-P6-v1
Sme-Mir-1992-P6-v2
Snu-Mir-1992
War-Mir-1992
|
Node of Origin (locus) |
Platytrochozoa
|
Node of Origin (family) |
Platytrochozoa
|
Genome context (Ruditapes_GCA_009026015) |
CM018537.1: 21686874-21686934 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GAUUUUAGCACUAAUCUUAUGUCUACUGUAAGUCAGUGGUGGGCUGUUUGGUACUUGUACUAUGCUUAUCAGCAGUUGUACCACUGAUUUGUAGUGGAUAUACCUAACAGCAUGCCAUUUU
Get precursor sequence
|
Structure | 10 20 30 40 50
GAUUUUAGCACUAAUCU-- -| U CUUGUA
UAUGUCUACUGUAAGUCAGUGGUG GGCUGUU GGUA \
AUAUAGGUGAUGUUUAGUCACCAU UUGACGA CUAU C
UUUUACCGUACGACAAUCC G^ - UCGUAU
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Star sequence |
Rph-Mir-1992_5p* |
mirBase accession | None |
Sequence |
0- AGUCAGUGGUGGGCUGUUUGGUA -23
Get sequence
|
Mature sequence |
Rph-Mir-1992_3p |
mirBase accession | None |
Sequence |
38- UCAGCAGUUGUACCACUGAUUUG -61
Get sequence
|