MirGeneDB 3.0
MirGeneDB ID

Cte-Mir-1992

Family name MIR-1992 (all species)
Seed CAGCAGU
Species Polychaete worm (Capitella teleta)
MiRBase ID cte-mir-1992
Paralogues
Orthologues Agr-Mir-1992  Dgr-Mir-1992  Eba-Mir-1992  Efe-Mir-1992-P3  Efe-Mir-1992-P4  Egr-Mir-1992  Esc-Mir-1992  Gsa-Mir-1992  Hru-Mir-1992  Lan-Mir-1992  Lgi-Mir-1992-P1  Lgi-Mir-1992-P2  Llo-Mir-1992  Mgi-Mir-1992  Mom-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ofu-Mir-1992  Ovu-Mir-1992  Pau-Mir-1992  Pcr-Mir-1992  Pdu-Mir-1992  Pve-Mir-1992  Rph-Mir-1992  Sma-Mir-1992  Sme-Mir-1992-P5  Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2  Snu-Mir-1992  War-Mir-1992 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(Capitella_teleta_v1.0)		 CAPTEscaffold_189: 201929-201990 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGCGUAUACAGGAAUGCUAGCUGUGUCUCGUCGGUGGAUGGUUGCUGGUAGUACCAUUGCCAGCCUAUCAGCAGUUGUACCACUGAUGUGACACGCCUUGCUUCUGCUGCAUCGAUCGGU
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Structure
        10          20        30         40        50          
CGUGCGUAUACAGGAAU--  U  C      U         -| GG         GUACCAU 
                   GC AG UGUGUC CGUCGGUGG AU  UUGCUGGUA       \
                   CG UC GCACAG GUAGUCACC UG  GACGACUAU       U
UGGCUAGCUACGUCGUCUU  U  C      U         A^ UU         CCGACCG 
120       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ea Fe Fe La La Ma Ma To
Star sequence

Cte-Mir-1992_5p*
mirBase accessionNone
Sequence 
0- CGUCGGUGGAUGGUUGCUGGUA -22
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Mature sequence

Cte-Mir-1992_3p
mirBase accessionMIMAT0009700
Sequence 
39- UCAGCAGUUGUACCACUGAUGUG -62
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