MirGeneDB 3.0
MirGeneDB ID

Pdu-Mir-1992

Family name MIR-1992 (all species)
Seed AUUAGUG
Species Dumerils clam worm (Platynereis dumerilii)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1992  Cte-Mir-1992  Dgr-Mir-1992  Eba-Mir-1992  Efe-Mir-1992-P3  Efe-Mir-1992-P4  Egr-Mir-1992  Esc-Mir-1992  Gsa-Mir-1992  Hru-Mir-1992  Lan-Mir-1992  Lgi-Mir-1992-P1  Lgi-Mir-1992-P2  Llo-Mir-1992  Mgi-Mir-1992  Mom-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ofu-Mir-1992  Ovu-Mir-1992  Pau-Mir-1992  Pcr-Mir-1992  Pve-Mir-1992  Rph-Mir-1992  Sma-Mir-1992  Sme-Mir-1992-P5  Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2  Snu-Mir-1992  War-Mir-1992 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(GCA_026936325.1_EMBL_pdum_1.0)		 JAPTHN010000012.1: 23661449-23661512 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGCGUCUUCCUGACUCUGGCACUGGCAGCACAUUAGUGGAUAACGGCUGGUAGUAACAUUACGUCUGCCUAUCAGCAGUUGUACCACUGAUGUGUGGCUGGUGUCGCCAUCUACUAACAAUCUG
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Structure
        10          20        30         40        50        60 
UGCGUCUUCCUGACUCU--     UG  A            -|    G       GUAACAUU 
                   GGCAC  GC GCACAUUAGUGG AUAAC GCUGGUA        \
                   CUGUG  CG UGUGUAGUCACC UGUUG CGACUAU        A
GUCUAACAAUCAUCUACCG     GU  G            A^    A       CCGUCUGC 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
24 24 24 24 24 36 36 36 36 36 48 48 48 48 48 6d 6d 6d 6d 72 72 72 72 72
Mature sequence

Pdu-Mir-1992_5p
mirBase accessionNone
Sequence 
0- CAUUAGUGGAUAACGGCUGGUA -22
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Co-mature sequence

Pdu-Mir-1992_3p
mirBase accessionNone
Sequence 
41- UCAGCAGUUGUACCACUGAUGUG -64
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