Mir-1992-P6-v2

MirGeneDB ID

Sme-Mir-1992-P6-v2

Family name

MIR-1992 (all species)

Seed

CGCCAAU

Species

Freshwater planarian (Schmidtea mediterranea)

MiRBase ID

sme-mir-2149

Paralogues

Sme-Mir-1992-P5 Sme-Mir-1992-P6-v1

Orthologues

Agr-Mir-1992 Cte-Mir-1992 Dgr-Mir-1992 Eba-Mir-1992 Egr-Mir-1992 Esc-Mir-1992 Gsa-Mir-1992 Hru-Mir-1992 Lan-Mir-1992 Llo-Mir-1992 Mgi-Mir-1992 Mom-Mir-1992 Npo-Mir-1992 Obi-Mir-1992 Ofu-Mir-1992 Ovu-Mir-1992 Pau-Mir-1992 Pcr-Mir-1992 Pdu-Mir-1992 Pve-Mir-1992 Rph-Mir-1992 Sma-Mir-1992 Snu-Mir-1992 War-Mir-1992

Node of Origin (locus)

S. mediterranea

Node of Origin (family)

Platytrochozoa

Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)

NNSW01000053_dd_Smes_g4_53: 1164866-1164929 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-1992-P6-v2)

Mir-1992-P6-v2 NNSW01000053_dd_Smes_g4_53: 1164866-1164929 [-] UCSC Ensembl
Mir-1992-P6-v1 NNSW01000053_dd_Smes_g4_53: 1164867-1164928 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UGUAUAUAUUUGCAGAAGAUCAAAUGAGUACCGCCAAUGACAAACUGUUGAUGAAGACUUUGUCACAAUUAUCAGCAGUUGUCCAUUGACGUUAUUUACCUUCGUUUUCAUCGAACUAUUUUUU

Get precursor sequence

Structure

        10            20        30         40        50        60 
UGUAUAUAUUUGCAGAA----| UCAAA      C  C     -    A        GAAGACUU 
                     GA     UGAGUA CG CAAUG ACAA CUGUUGAU        U
                     CU     AUUUAU GC GUUAC UGUU GACGACUA        G
UUUUUUAUCAAGCUACUUUUG^ UCC--      U  A     C    -        UUAACACU 
  120       110       100          90        80         70