MirGeneDB 3.0
MirGeneDB ID

Pau-Mir-1992

Family name MIR-1992 (all species)
Seed CAGCAGU
Species Horseshoe worm (Phoronis australis)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1992  Cte-Mir-1992  Dgr-Mir-1992  Eba-Mir-1992  Efe-Mir-1992-P3  Efe-Mir-1992-P4  Egr-Mir-1992  Esc-Mir-1992  Gsa-Mir-1992  Hru-Mir-1992  Lan-Mir-1992  Lgi-Mir-1992-P1  Lgi-Mir-1992-P2  Llo-Mir-1992  Mgi-Mir-1992  Mom-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ofu-Mir-1992  Ovu-Mir-1992  Pcr-Mir-1992  Pdu-Mir-1992  Pve-Mir-1992  Rph-Mir-1992  Sma-Mir-1992  Sme-Mir-1992-P5  Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2  Snu-Mir-1992  War-Mir-1992 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(Phoronis_australis_GCA_002633005)		 NMRA01000176.1: 600304-600363 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGAUGGCUCCAGAAGAUGGGCACCGCUGUGCGUCAGUGUUUAAUUGCUGGUACGGCUCUGAAUUCUAUCAGCAGUUGUACCACUGAUGCGCAGAGGUCACCGUUAGCAACAGUUACUUGG
Get precursor sequence
Structure
        10          20        30        40         50         
UGAUGGCUCCAGAAGAU--  GC   G             UU-|           CGGCUC 
                   GG  ACC CUGUGCGUCAGUG   UAAUUGCUGGUA      \
                   CC  UGG GACGCGUAGUCAC   GUUGACGACUAU      U
GGUUCAUUGACAACGAUUG  AC   A             CAU^           CUUAAG 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ph
Star sequence

Pau-Mir-1992_5p*
mirBase accessionNone
Sequence 
0- CGUCAGUGUUUAAUUGCUGGUA -22
Get sequence
Mature sequence

Pau-Mir-1992_3p
mirBase accessionNone
Sequence 
37- UCAGCAGUUGUACCACUGAUGCG -60
Get sequence