MirGeneDB ID | Pau-Mir-1992 |
Family name |
MIR-1992 (all species) |
Seed |
CAGCAGU |
Species |
Horseshoe worm (Phoronis australis) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Agr-Mir-1992
Cte-Mir-1992
Dgr-Mir-1992
Eba-Mir-1992
Efe-Mir-1992-P3
Efe-Mir-1992-P4
Egr-Mir-1992
Esc-Mir-1992
Gsa-Mir-1992
Hru-Mir-1992
Lan-Mir-1992
Lgi-Mir-1992-P1
Lgi-Mir-1992-P2
Llo-Mir-1992
Mgi-Mir-1992
Mom-Mir-1992
Npo-Mir-1992
Obi-Mir-1992
Ofu-Mir-1992
Ovu-Mir-1992
Pcr-Mir-1992
Pdu-Mir-1992
Pve-Mir-1992
Rph-Mir-1992
Sma-Mir-1992
Sme-Mir-1992-P5
Sme-Mir-1992-P6-v1
Sme-Mir-1992-P6-v2
Snu-Mir-1992
War-Mir-1992
|
Node of Origin (locus) |
Platytrochozoa
|
Node of Origin (family) |
Platytrochozoa
|
Genome context (Phoronis_australis_GCA_002633005) |
NMRA01000176.1: 600304-600363 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UGAUGGCUCCAGAAGAUGGGCACCGCUGUGCGUCAGUGUUUAAUUGCUGGUACGGCUCUGAAUUCUAUCAGCAGUUGUACCACUGAUGCGCAGAGGUCACCGUUAGCAACAGUUACUUGG
Get precursor sequence
|
Structure | 10 20 30 40 50
UGAUGGCUCCAGAAGAU-- GC G UU-| CGGCUC
GG ACC CUGUGCGUCAGUG UAAUUGCUGGUA \
CC UGG GACGCGUAGUCAC GUUGACGACUAU U
GGUUCAUUGACAACGAUUG AC A CAU^ CUUAAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Pau-Mir-1992_5p* |
mirBase accession | None |
Sequence |
0- CGUCAGUGUUUAAUUGCUGGUA -22
Get sequence
|
Mature sequence |
Pau-Mir-1992_3p |
mirBase accession | None |
Sequence |
37- UCAGCAGUUGUACCACUGAUGCG -60
Get sequence
|