MirGeneDB 3.0
MirGeneDB ID

Snu-Mir-1992

Family name MIR-1992 (all species)
Seed CAGCAGU
Species Peanut worm (Sipunculus nudus)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1992  Cte-Mir-1992  Dgr-Mir-1992  Eba-Mir-1992  Efe-Mir-1992-P3  Efe-Mir-1992-P4  Egr-Mir-1992  Esc-Mir-1992  Gsa-Mir-1992  Hru-Mir-1992  Lan-Mir-1992  Lgi-Mir-1992-P1  Lgi-Mir-1992-P2  Llo-Mir-1992  Mgi-Mir-1992  Mom-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ofu-Mir-1992  Ovu-Mir-1992  Pau-Mir-1992  Pcr-Mir-1992  Pdu-Mir-1992  Pve-Mir-1992  Rph-Mir-1992  Sma-Mir-1992  Sme-Mir-1992-P5  Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2  War-Mir-1992 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(GCA_026874595.1_ASM2687459v1_Sipunculus_nudus)		 CM049321.1: 9019061-9019120 [-]
Precursor
(pre-Mir +30nt flank)
GCUGGAGUCAGAGAUUUGGUUACUAUGGCACGUCAGUGUAUGUCUGCUGGUAUCCACUGGCAACGUAUCAGCAGUUGUACCACUGAUGUGCUAUGGUUGUCCAUGGCAACAAAAUGGAAG
Get precursor sequence
Structure
        10         20         30         40        50         
GCUGGAGUCAGAGAUUU-  UU-                -|    U         UCCACU 
                  GG   ACUAUGGCACGUCAGU GUAUG CUGCUGGUA      \
                  CC   UGGUAUCGUGUAGUCA CAUGU GACGACUAU      G
GAAGGUAAAACAACGGUA  UGU                C^    U         GCAACG 
.       110       100        90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ph
Star sequence

Snu-Mir-1992_5p* (predicted)
mirBase accessionNone
Sequence 
0- CGUCAGUGUAUGUCUGCUGGUA -22
Get sequence
Mature sequence

Snu-Mir-1992_3p
mirBase accessionNone
Sequence 
37- UCAGCAGUUGUACCACUGAUGUG -60
Get sequence