MirGeneDB ID | Egr-Mir-1992 |
Family name |
MIR-1992 (all species) |
Seed |
CAGCAGU |
Species |
Hydatid worm (Echinococcus granulosus) |
MiRBase ID |
egr-mir-1992
|
Paralogues |
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Orthologues |
Agr-Mir-1992
Cte-Mir-1992
Dgr-Mir-1992
Eba-Mir-1992
Efe-Mir-1992-P3
Efe-Mir-1992-P4
Esc-Mir-1992
Gsa-Mir-1992
Hru-Mir-1992
Lan-Mir-1992
Lgi-Mir-1992-P1
Lgi-Mir-1992-P2
Llo-Mir-1992
Mgi-Mir-1992
Mom-Mir-1992
Npo-Mir-1992
Obi-Mir-1992
Ofu-Mir-1992
Ovu-Mir-1992
Pau-Mir-1992
Pcr-Mir-1992
Pdu-Mir-1992
Pve-Mir-1992
Rph-Mir-1992
Sma-Mir-1992
Sme-Mir-1992-P5
Sme-Mir-1992-P6-v1
Sme-Mir-1992-P6-v2
Snu-Mir-1992
War-Mir-1992
|
Node of Origin (locus) |
Platytrochozoa
|
Node of Origin (family) |
Platytrochozoa
|
Genome context (GCA_000524195.1_ASM52419v1_Egranulosus) |
APAU02000092.1: 131564-131631 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUCUGUUAGGUUUUUCUGAAUGACAAUCCGUUUCAUUGGUCAAUUGCUAAUAUUUCUUGCGUAAAUUUACAAAUAUCAGCAGUUGUACCAUUGAAAUGAAUCAUUCUGAGAACUCCUUCAUAAAAAUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AUCUGUUAGGUUUUUCU-----| CAAUC U - A UUUCUUGCGU
GAAUGA CGUUUCA UGGU CAAUUGCU AUA \
CUUACU GUAAAGU ACCA GUUGACGA UAU A
GUAAAAAUACUUCCUCAAGAGU^ AA--- U U C AAACAUUUAA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Eg |
Eg |
Ev |
Ev |
Ad |
Fe |
Fe |
Hy |
Hy |
Hy |
Li |
Li |
Li |
Mi |
Mi |
Mi |
Po |
Po |
Po |
Po |
Po |
Po |
Po |
Pr |
Pr |
Pr |
Sm |
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Star sequence |
Egr-Mir-1992_5p* |
mirBase accession | MIMAT0041197 |
Sequence |
0- UUUCAUUGGUCAAUUGCUAAUA -22
Get sequence
|
Mature sequence |
Egr-Mir-1992_3p |
mirBase accession | MIMAT0041198 |
Sequence |
45- UCAGCAGUUGUACCAUUGAAAUG -68
Get sequence
|