MirGeneDB 3.0
MirGeneDB ID

Egr-Mir-1992

Family name MIR-1992 (all species)
Seed CAGCAGU
Species Hydatid worm (Echinococcus granulosus)
MiRBase ID egr-mir-1992
Paralogues
Orthologues Agr-Mir-1992  Cte-Mir-1992  Dgr-Mir-1992  Eba-Mir-1992  Efe-Mir-1992-P3  Efe-Mir-1992-P4  Esc-Mir-1992  Gsa-Mir-1992  Hru-Mir-1992  Lan-Mir-1992  Lgi-Mir-1992-P1  Lgi-Mir-1992-P2  Llo-Mir-1992  Mgi-Mir-1992  Mom-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ofu-Mir-1992  Ovu-Mir-1992  Pau-Mir-1992  Pcr-Mir-1992  Pdu-Mir-1992  Pve-Mir-1992  Rph-Mir-1992  Sma-Mir-1992  Sme-Mir-1992-P5  Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2  Snu-Mir-1992  War-Mir-1992 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(GCA_000524195.1_ASM52419v1_Egranulosus)		 APAU02000092.1: 131564-131631 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUCUGUUAGGUUUUUCUGAAUGACAAUCCGUUUCAUUGGUCAAUUGCUAAUAUUUCUUGCGUAAAUUUACAAAUAUCAGCAGUUGUACCAUUGAAAUGAAUCAUUCUGAGAACUCCUUCAUAAAAAUG
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Structure
        10             20        30        40         50        60   
AUCUGUUAGGUUUUUCU-----|     CAAUC       U    -        A   UUUCUUGCGU 
                      GAAUGA     CGUUUCA UGGU CAAUUGCU AUA          \
                      CUUACU     GUAAAGU ACCA GUUGACGA UAU          A
GUAAAAAUACUUCCUCAAGAGU^     AA---       U    U        C   AAACAUUUAA 
      120       110       100           90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Er Er Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr Sr
Star sequence

Egr-Mir-1992_5p*
mirBase accessionMIMAT0041197
Sequence 
0- UUUCAUUGGUCAAUUGCUAAUA -22
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Mature sequence

Egr-Mir-1992_3p
mirBase accessionMIMAT0041198
Sequence 
45- UCAGCAGUUGUACCAUUGAAAUG -68
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