MirGeneDB ID | Llo-Mir-1992 |
Family name |
MIR-1992 (all species) |
Seed |
CAGCAGU |
Species |
Bootlace worm (Lineus longissimus) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Agr-Mir-1992
Cte-Mir-1992
Dgr-Mir-1992
Eba-Mir-1992
Efe-Mir-1992-P3
Efe-Mir-1992-P4
Egr-Mir-1992
Esc-Mir-1992
Gsa-Mir-1992
Hru-Mir-1992
Lan-Mir-1992
Lgi-Mir-1992-P1
Lgi-Mir-1992-P2
Mgi-Mir-1992
Mom-Mir-1992
Npo-Mir-1992
Obi-Mir-1992
Ofu-Mir-1992
Ovu-Mir-1992
Pau-Mir-1992
Pcr-Mir-1992
Pdu-Mir-1992
Pve-Mir-1992
Rph-Mir-1992
Sma-Mir-1992
Sme-Mir-1992-P5
Sme-Mir-1992-P6-v1
Sme-Mir-1992-P6-v2
Snu-Mir-1992
War-Mir-1992
|
Node of Origin (locus) |
Platytrochozoa
|
Node of Origin (family) |
Platytrochozoa
|
Genome context (GCA_910592395.2_tnLinLong1) |
OU343006.1: 11524061-11524119 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCUUGGAUGAUGAUUUUGUCGUAGCCCUCCAUCAGUGGAUGAUUGCUGGUAGUUUUAUACAAGUAUCAGCAGUUGUACCACUGAUGUGGGGACAUUGACACAGGCAGCUGGAGGACAG
Get precursor sequence
|
Structure | 10 20 30 40 50
ACCUUGGAUGAUGAUUU- UAG- UC -|UG GUUUU
UGUCG CCC CAUCAGUGG A AUUGCUGGUA A
ACAGU GGG GUAGUCACC U UGACGACUAU U
GACAGGAGGUCGACGGAC UACA GU A^GU GAACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Llo-Mir-1992_5p* |
mirBase accession | None |
Sequence |
0- CAUCAGUGGAUGAUUGCUGGUA -22
Get sequence
|
Mature sequence |
Llo-Mir-1992_3p |
mirBase accession | None |
Sequence |
36- UCAGCAGUUGUACCACUGAUGUG -59
Get sequence
|