MirGeneDB ID | Efe-Mir-1992-P3 |
Family name |
MIR-1992 (all species) |
Seed |
CAGCAGU |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-1992-P4
|
Orthologues |
Agr-Mir-1992
Cte-Mir-1992
Dgr-Mir-1992
Eba-Mir-1992
Egr-Mir-1992
Esc-Mir-1992
Gsa-Mir-1992
Hru-Mir-1992
Lan-Mir-1992
Llo-Mir-1992
Mgi-Mir-1992
Mom-Mir-1992
Npo-Mir-1992
Obi-Mir-1992
Ofu-Mir-1992
Ovu-Mir-1992
Pau-Mir-1992
Pcr-Mir-1992
Pdu-Mir-1992
Pve-Mir-1992
Rph-Mir-1992
Sma-Mir-1992
Snu-Mir-1992
War-Mir-1992
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Platytrochozoa
|
Genome context (Efe_combined) |
Efet.01.192781: 1365-1426 [-]
|
Precursor (pre-Mir +30nt flank) |
AUUAUAUGACGCAGCUGAGAGCUUAAUCGCAGCAGUGGAUGACUACUGGUAGUUAUUUUAGACUAACCUAUCAGCAGUUAUACCACUGAUGUGCUAGAGCGUCGGAUUCGACUCCCCACCAA
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|
Structure | 10 20 30 40 50
AUUAUAUGACGCAGCUGA- - AAU G -| A GUUAUUUU
GA GCUU CGCA CAGUGG AUGACU CUGGUA \
CU CGAG GUGU GUCACC UAUUGA GACUAU A
AACCACCCCUCAGCUUAGG G AUC A A^ C CCAAUCAG
120 110 100 90 80 70 |
Deep sequencing |
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|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Efe-Mir-1992-P3_5p* |
mirBase accession | None |
Sequence |
0- AGCAGUGGAUGACUACUGGUA -21
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|
Mature sequence |
Efe-Mir-1992-P3_3p |
mirBase accession | None |
Sequence |
40- UCAGCAGUUAUACCACUGAUGU -62
Get sequence
|