MirGeneDB ID | Ovu-Mir-1992 |
Family name |
MIR-1992 (all species) |
Seed |
CAGCAGU |
Species |
Common octopus (Octopus vulgaris) |
MiRBase ID |
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Paralogues |
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Orthologues |
Agr-Mir-1992
Cte-Mir-1992
Dgr-Mir-1992
Eba-Mir-1992
Efe-Mir-1992-P3
Efe-Mir-1992-P4
Egr-Mir-1992
Esc-Mir-1992
Gsa-Mir-1992
Hru-Mir-1992
Lan-Mir-1992
Lgi-Mir-1992-P1
Lgi-Mir-1992-P2
Llo-Mir-1992
Mgi-Mir-1992
Mom-Mir-1992
Npo-Mir-1992
Obi-Mir-1992
Ofu-Mir-1992
Pau-Mir-1992
Pcr-Mir-1992
Pdu-Mir-1992
Pve-Mir-1992
Rph-Mir-1992
Sma-Mir-1992
Sme-Mir-1992-P5
Sme-Mir-1992-P6-v1
Sme-Mir-1992-P6-v2
Snu-Mir-1992
War-Mir-1992
|
Node of Origin (locus) |
Platytrochozoa
|
Node of Origin (family) |
Platytrochozoa
|
Genome context (GCA_003957725.1_ASM395772v1_OVU) |
RXHP01067614.1: 139572-139636 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCGAUGAUGAGAUCACUGUUCUUCGCAGCACGUCAGUGGAUGAUUGCUGGUAGUCACCAGUUUCAUACUGUAUCAGCAGUUGUACCACUGAUUUGCUGAGUUGGAUAUCUACUACAACUACCACA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCGAUGAUGAGAUCACU-- UUCG C -|UG GUCACCAG
GUUC CAGCA GUCAGUGG A AUUGCUGGUA U
UAGG GUCGU UAGUCACC U UGACGACUAU U
ACACCAUCAACAUCAUCUA UUGA U A^GU GUCAUACU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
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Ax |
Ce |
Fr |
He |
In |
Op |
Op |
Pe |
Po |
Re |
Sk |
St |
Su |
Su |
Te |
Ve |
Vi |
Wh |
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Star sequence |
Ovu-Mir-1992_5p* |
mirBase accession | None |
Sequence |
0- CGUCAGUGGAUGAUUGCUGGUA -22
Get sequence
|
Mature sequence |
Ovu-Mir-1992_3p |
mirBase accession | None |
Sequence |
42- UCAGCAGUUGUACCACUGAUUUG -65
Get sequence
|