MirGeneDB 3.0
MirGeneDB ID

Sma-Mir-1992

Family name MIR-1992 (all species)
Seed CAGCAGU
Species Blood fluke (Schistosoma mansoni)
MiRBase ID
Paralogues
Orthologues Agr-Mir-1992  Cte-Mir-1992  Dgr-Mir-1992  Eba-Mir-1992  Efe-Mir-1992-P3  Efe-Mir-1992-P4  Egr-Mir-1992  Esc-Mir-1992  Gsa-Mir-1992  Hru-Mir-1992  Lan-Mir-1992  Lgi-Mir-1992-P1  Lgi-Mir-1992-P2  Llo-Mir-1992  Mgi-Mir-1992  Mom-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ofu-Mir-1992  Ovu-Mir-1992  Pau-Mir-1992  Pcr-Mir-1992  Pdu-Mir-1992  Pve-Mir-1992  Rph-Mir-1992  Sme-Mir-1992-P5  Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2  Snu-Mir-1992  War-Mir-1992 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(GCA_000237925.5_SM_V9_genomic)		 HE601630.3: 11729903-11730000 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCGACAAAAUAAAGGGGAUAUGUGUUCUGUUCGUUGGUCAACUGUUUAUACAUUCACAUAUUUAAAUUUAAAAAAAAAAUUAAUACAUGUGUGAAGUAUUAAUCGUAUCAGCAGUUGCACCAUCGAUGCAAACGUCCUCUGAAUCAACCGAAAAUUUG
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Structure
        10        20          30          40        50        60        70        
CCGACAAAAUAAAGGGGAUAUG--    C   -   U    -|       U   CAUUCACAUAUUUAAAUUUAAAAAAAA 
                        UGUU UGU UCG UGGU CAACUGUU AUA                           \
                        GCAA ACG AGC ACCA GUUGACGA UAU                           A
GUUUAAAAGCCAACUAAGUCUCCU    -   U   U    C^       C   GCUAAUUAUGAAGUGUGUACAUAAUUA 
      150       140        130       120       110       100        90        80
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
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Star sequence

Sma-Mir-1992_5p* (predicted)
mirBase accessionNone
Sequence 
0- UCGUUGGUCAACUGUUUAUA -20
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Mature sequence

Sma-Mir-1992_3p
mirBase accessionNone
Sequence 
77- UCAGCAGUUGCACCAUCGAUG -98
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