MirGeneDB 2.1

MirGeneDB ID

Npo-Mir-1992

Family name MIR-1992 (all species)
Seed CAGCAGU
Species Chambered Nautilus (Nautilus pompilius)
MiRBase ID
Paralogues
Orthologues Cgi-Mir-1992  Cte-Mir-1992  Efe-Mir-1992-P3  Efe-Mir-1992-P4  Esc-Mir-1992  Lan-Mir-1992  Lgi-Mir-1992-P1  Lgi-Mir-1992-P2  Obi-Mir-1992  Ovu-Mir-1992  Sme-Mir-1992-P5  Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(GCA_018389105_NPO)
JACATO010001876.1: 280757-280818 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAUGAAUCCAUGAAAUGAGUGCUUCCAGUCCGUCAGUGGAUGAUUGCUGGUACCCAGCACUGAACUGUAUCAGCAGUUGUACCACUGAUUUGCUGGGGGUAACUAUGGCAGCAAAACUGGUU
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Structure
        10          20        30         40        50          
GAUGAAUCCAUGAAAUG-  -          CC        -|UG          CCCAGCA 
                  AG UGCUUCCAGU  GUCAGUGG A  AUUGCUGGUA       \
                  UC AUGGGGGUCG  UAGUCACC U  UGACGACUAU       C
UUGGUCAAAACGACGGUA  A          UU        A^GU          GUCAAGU 
120       110       100        90        80        70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Star sequence

Npo-Mir-1992_5p* (predicted)

mirBase accessionNone
Sequence
0- CGUCAGUGGAUGAUUGCUGGUA -22
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Mature sequence

Npo-Mir-1992_3p (predicted)

mirBase accessionNone
Sequence
39- UCAGCAGUUGUACCACUGAUUUG -62
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