MirGeneDB 3.0
MirGeneDB ID

Efe-Mir-1992-P4

Family name MIR-1992 (all species)
Seed CAGCAGU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-1992-P3 
Orthologues Agr-Mir-1992  Cte-Mir-1992  Dgr-Mir-1992  Eba-Mir-1992  Egr-Mir-1992  Esc-Mir-1992  Gsa-Mir-1992  Hru-Mir-1992  Lan-Mir-1992  Llo-Mir-1992  Mgi-Mir-1992  Mom-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ofu-Mir-1992  Ovu-Mir-1992  Pau-Mir-1992  Pcr-Mir-1992  Pdu-Mir-1992  Pve-Mir-1992  Rph-Mir-1992  Sma-Mir-1992  Snu-Mir-1992  War-Mir-1992 
Node of Origin (locus) E. fetida
Node of Origin (family) Platytrochozoa
Genome context
(Efe_combined)		 Efe-Mir-1992-P4_manual_assembly: 60-121 [+]
Precursor
(pre-Mir +30nt flank)
GCGUGACGUCAUCCGUCUCUGACCAUACUGCAUCAGUGGUUUCUGCUGGUAGUACCUUUCAUAUACCUAUCAGCAGUUGUACCACUGACGUCACGUGGCAGGAGUGUCAGCCGUAUUGACGC
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Structure
        10           20        30        40          50         
GCGUGACGUCAUCCGUC---    A    ACU  A        UU--|        GUACCUU 
                    UCUG CCAU   GC UCAGUGGU    CUGCUGGUA       U
                    GGAC GGUG   UG AGUCACCA    GACGACUAU       C
CGCAGUUAUGCCGACUGUGA    -    CAC  C        UGUU^        CCAUAUA 
120       110       100         90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17)
Tissue expression
-   +
To
Star sequence

Efe-Mir-1992-P4_5p*
mirBase accessionNone
Sequence 
0- CAUCAGUGGUUUCUGCUGGUA -21
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Mature sequence

Efe-Mir-1992-P4_3p
mirBase accessionNone
Sequence 
39- UCAGCAGUUGUACCACUGACGUC -62
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