MirGeneDB ID | Agr-Mir-1992 |
Family name |
MIR-1992 (all species) |
Seed |
CAGCAGU |
Species |
West Indian fuzzy chiton (Acanthopleura granulata ) |
MiRBase ID |
|
Paralogues |
|
Orthologues |
Cte-Mir-1992
Dgr-Mir-1992
Eba-Mir-1992
Efe-Mir-1992-P3
Efe-Mir-1992-P4
Egr-Mir-1992
Esc-Mir-1992
Gsa-Mir-1992
Hru-Mir-1992
Lan-Mir-1992
Lgi-Mir-1992-P1
Lgi-Mir-1992-P2
Llo-Mir-1992
Mgi-Mir-1992
Mom-Mir-1992
Npo-Mir-1992
Obi-Mir-1992
Ofu-Mir-1992
Ovu-Mir-1992
Pau-Mir-1992
Pcr-Mir-1992
Pdu-Mir-1992
Pve-Mir-1992
Rph-Mir-1992
Sma-Mir-1992
Sme-Mir-1992-P5
Sme-Mir-1992-P6-v1
Sme-Mir-1992-P6-v2
Snu-Mir-1992
War-Mir-1992
|
Node of Origin (locus) |
Platytrochozoa
|
Node of Origin (family) |
Platytrochozoa
|
Genome context (GCA_016165875.1_ASM1616587v1_Acanthopleura_granula) |
JABBOT010000016.1: 10375477-10375539 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CGAUAAAUGGCGCUGCUGUGACUUACAAUACGUCAGUGGAUGAUUGCUGGUAGAUUUUCUCUACACAAUAUCAGCAGUUGUACCACUGAUUUGUUGUCUGUUUACUAACUCGUCUUUACCGCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CGAUAAAUGGCGCUGCU- - UU C -|UG GAUUUUC
GU GAC ACAAUA GUCAGUGG A AUUGCUGGUA U
CA UUG UGUUGU UAGUCACC U UGACGACUAU C
CCGCCAUUUCUGCUCAAU U UC U A^GU AACACAU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Agr-Mir-1992_5p* |
mirBase accession | None |
Sequence |
0- CGUCAGUGGAUGAUUGCUGGUA -22
Get sequence
|
Mature sequence |
Agr-Mir-1992_3p |
mirBase accession | None |
Sequence |
40- UCAGCAGUUGUACCACUGAUUUG -63
Get sequence
|