MirGeneDB 3.0
MirGeneDB ID

Agr-Mir-1992

Family name MIR-1992 (all species)
Seed CAGCAGU
Species West Indian fuzzy chiton (Acanthopleura granulata )
MiRBase ID
Paralogues
Orthologues Cte-Mir-1992  Dgr-Mir-1992  Eba-Mir-1992  Efe-Mir-1992-P3  Efe-Mir-1992-P4  Egr-Mir-1992  Esc-Mir-1992  Gsa-Mir-1992  Hru-Mir-1992  Lan-Mir-1992  Lgi-Mir-1992-P1  Lgi-Mir-1992-P2  Llo-Mir-1992  Mgi-Mir-1992  Mom-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ofu-Mir-1992  Ovu-Mir-1992  Pau-Mir-1992  Pcr-Mir-1992  Pdu-Mir-1992  Pve-Mir-1992  Rph-Mir-1992  Sma-Mir-1992  Sme-Mir-1992-P5  Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2  Snu-Mir-1992  War-Mir-1992 
Node of Origin (locus) Platytrochozoa
Node of Origin (family) Platytrochozoa
Genome context
(GCA_016165875.1_ASM1616587v1_Acanthopleura_granula)		 JABBOT010000016.1: 10375477-10375539 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CGAUAAAUGGCGCUGCUGUGACUUACAAUACGUCAGUGGAUGAUUGCUGGUAGAUUUUCUCUACACAAUAUCAGCAGUUGUACCACUGAUUUGUUGUCUGUUUACUAACUCGUCUUUACCGCC
Get precursor sequence
Structure
        10          20        30         40        50        60
CGAUAAAUGGCGCUGCU-  -   UU      C        -|UG          GAUUUUC 
                  GU GAC  ACAAUA GUCAGUGG A  AUUGCUGGUA       U
                  CA UUG  UGUUGU UAGUCACC U  UGACGACUAU       C
CCGCCAUUUCUGCUCAAU  U   UC      U        A^GU          AACACAU 
 120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Le
Star sequence

Agr-Mir-1992_5p*
mirBase accessionNone
Sequence 
0- CGUCAGUGGAUGAUUGCUGGUA -22
Get sequence
Mature sequence

Agr-Mir-1992_3p
mirBase accessionNone
Sequence 
40- UCAGCAGUUGUACCACUGAUUUG -63
Get sequence