MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-1992-P5

Family name MIR-1992 (all species)
Seed CAGCAGU
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-1992
Paralogues Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2 
Orthologues Agr-Mir-1992  Cte-Mir-1992  Dgr-Mir-1992  Eba-Mir-1992  Egr-Mir-1992  Esc-Mir-1992  Gsa-Mir-1992  Hru-Mir-1992  Lan-Mir-1992  Llo-Mir-1992  Mgi-Mir-1992  Mom-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ofu-Mir-1992  Ovu-Mir-1992  Pau-Mir-1992  Pcr-Mir-1992  Pdu-Mir-1992  Pve-Mir-1992  Rph-Mir-1992  Sma-Mir-1992  Snu-Mir-1992  War-Mir-1992 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Platytrochozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000030_dd_Smes_g4_30: 1784506-1784563 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUGUUCUAGUAUUAUGAAAUAAAGAAUUUGUCUUGAACAACUGCUUAUGAUGAAAAAAUGUCAUCAGCAGUUGUUCCAUUGACAAGUUAUAUUUCAUUGAUAUUCAUGGAUUUUAU
Get precursor sequence
Structure
        10            20        30          40        50       
AUUUGUUCUAGUAUUAU----|     AAG        UU--           U   AUGAA 
                     GAAAUA   AAUUUGUC    GAACAACUGCU AUG     A
                     CUUUAU   UUGAACAG    CUUGUUGACGA UAC     A
UAUUUUAGGUACUUAUAGUUA^     A--        UUAC           C   UGUAA 
      110       100          90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-1992-P5_5p*
mirBase accessionMIMAT0012142
Sequence 
0- UGUCUUGAACAACUGCUUAUG -21
Get sequence
Mature sequence

Sme-Mir-1992-P5_3p
mirBase accessionMIMAT0011243
Sequence 
35- UCAGCAGUUGUUCCAUUGACAAG -58
Get sequence