MirGeneDB 2.1

MirGeneDB ID

Sme-Mir-1992-P5

Family name MIR-1992 (all species)
Seed GUCUUGA
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-1992
Paralogues Sme-Mir-1992-P6-v1  Sme-Mir-1992-P6-v2 
Orthologues Cgi-Mir-1992  Cte-Mir-1992  Esc-Mir-1992  Lan-Mir-1992  Npo-Mir-1992  Obi-Mir-1992  Ovu-Mir-1992 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Platytrochozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)
NNSW01000030_dd_Smes_g4_30: 1784506-1784563 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUGUUCUAGUAUUAUGAAAUAAAGAAUUUGUCUUGAACAACUGCUUAUGAUGAAAAAAUGUCAUCAGCAGUUGUUCCAUUGACAAGUUAUAUUUCAUUGAUAUUCAUGGAUUUUAU
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Structure
        10            20        30          40        50       
AUUUGUUCUAGUAUUAU----|     AAG        UU--           U   AUGAA 
                     GAAAUA   AAUUUGUC    GAACAACUGCU AUG     A
                     CUUUAU   UUGAACAG    CUUGUUGACGA UAC     A
UAUUUUAGGUACUUAUAGUUA^     A--        UUAC           C   UGUAA 
      110       100          90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14)
Tissue expression
 +
Se Se Se Se Se Se Se Se Se Se Se Se Ne Wh Wh Wh
Mature sequence

Sme-Mir-1992-P5_5p

mirBase accessionMIMAT0012142
Sequence
0- UGUCUUGAACAACUGCUUAUG -21
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Star sequence

Sme-Mir-1992-P5_3p*

mirBase accessionMIMAT0011243
Sequence
35- UCAGCAGUUGUUCCAUUGACAAG -58
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