MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-10-P6

Family name MIR-10 (all species)
Seed UCUCGUU
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-10-P1  Rph-Mir-10-P2  Rph-Mir-10-P3  Rph-Mir-10-P5 
Orthologues Adi-Mir-10  Agr-Mir-10-P6  Asp-Mir-10  Cte-Mir-10-P6  Eba-Mir-10-P6  Efe-Mir-10-P6  Esc-Mir-10-P6  Hru-Mir-10-P6  Lgi-Mir-10-P6  Lhy-Mir-10-P6  Mgi-Mir-10-P6  Mom-Mir-10-P6  Npo-Mir-10-P6  Nve-Mir-10  Obi-Mir-10-P6  Ofu-Mir-10-P6  Ovu-Mir-10-P6  Pve-Mir-10-P6  War-Mir-10-P6 
Node of Origin (locus) Neotrochozoa
Node of Origin (family) Eumetazoa
Genome context
(Ruditapes_GCA_009026015)
CM018531.1: 33041915-33041975 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAUACAAGAUUGUCUGGAAAUCUAGUAAUCUUACCCUGUAAAUCGGAGAAGUGUUCAUUUAGACUGACUUCUCGUUUCACAGGGUAUAUUUACUUACCAGAGUUUGACAGCAGACGACCG
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Structure
        10        20            30        40         50        60
AAAUACAAGAUUGUCUGGAAA   ----     UCU        -|   CG       GUUCAU 
                     UCU    AGUAA   UACCCUGU AAAU  GAGAAGU      U
                     AGA    UCAUU   AUGGGACA UUUG  CUCUUCA      U
GCCAGCAGACGACAGUUUG--   CCAU     UAU        C^   --       GUCAGA 
 .       110         100        90        80          70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-10-P6_5p*

mirBase accessionNone
Sequence
0- CUUACCCUGUAAAUCGGAGAAGU -23
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Mature sequence

Rph-Mir-10-P6_3p

mirBase accessionNone
Sequence
39- UUCUCGUUUCACAGGGUAUAUU -61
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