MirGeneDB ID | Rph-Mir-10-P6 |
Family name |
MIR-10 (all species) |
Seed |
UCUCGUU |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
|
Paralogues |
Rph-Mir-10-P1
Rph-Mir-10-P2
Rph-Mir-10-P3
Rph-Mir-10-P5
|
Orthologues |
Adi-Mir-10
Agr-Mir-10-P6
Asp-Mir-10
Cte-Mir-10-P6
Eba-Mir-10-P6
Efe-Mir-10-P6
Esc-Mir-10-P6
Hru-Mir-10-P6
Lgi-Mir-10-P6
Lhy-Mir-10-P6
Mgi-Mir-10-P6
Mom-Mir-10-P6
Npo-Mir-10-P6
Nve-Mir-10
Obi-Mir-10-P6
Ofu-Mir-10-P6
Ovu-Mir-10-P6
Pve-Mir-10-P6
War-Mir-10-P6
|
Node of Origin (locus) |
Neotrochozoa
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Ruditapes_GCA_009026015) |
CM018531.1: 33041915-33041975 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AAAUACAAGAUUGUCUGGAAAUCUAGUAAUCUUACCCUGUAAAUCGGAGAAGUGUUCAUUUAGACUGACUUCUCGUUUCACAGGGUAUAUUUACUUACCAGAGUUUGACAGCAGACGACCG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
AAAUACAAGAUUGUCUGGAAA ---- UCU -| CG GUUCAU
UCU AGUAA UACCCUGU AAAU GAGAAGU U
AGA UCAUU AUGGGACA UUUG CUCUUCA U
GCCAGCAGACGACAGUUUG-- CCAU UAU C^ -- GUCAGA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Star sequence |
Rph-Mir-10-P6_5p* |
mirBase accession | None |
Sequence |
0- CUUACCCUGUAAAUCGGAGAAGU -23
Get sequence
|
Mature sequence |
Rph-Mir-10-P6_3p |
mirBase accession | None |
Sequence |
39- UUCUCGUUUCACAGGGUAUAUU -61
Get sequence
|