MirGeneDB ID | Obi-Mir-10-P6 |
Family name |
MIR-10 (all species) |
Seed |
UUACCCU |
Species |
California two-spot octopus (Octopus bimaculoides) |
MiRBase ID |
|
Paralogues |
Obi-Mir-10-P2
Obi-Mir-10-P3
|
Orthologues |
Adi-Mir-10
Agr-Mir-10-P6
Asp-Mir-10
Cte-Mir-10-P6
Eba-Mir-10-P6
Efe-Mir-10-P6
Esc-Mir-10-P6
Hru-Mir-10-P6
Lgi-Mir-10-P6
Lhy-Mir-10-P6
Mgi-Mir-10-P6
Mom-Mir-10-P6
Npo-Mir-10-P6
Nve-Mir-10
Ofu-Mir-10-P6
Ovu-Mir-10-P6
Pve-Mir-10-P6
Rph-Mir-10-P6
War-Mir-10-P6
|
Node of Origin (locus) |
Neotrochozoa
|
Node of Origin (family) |
Eumetazoa
|
Genome context (PRJNA270931_OBI) |
KQ421072: 14768-14828 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
ACCUCACGCGGACAUAUGUUGAAGGAUUAACUUACCCUGUCAAUCGGAGAAGUUUAUAUUCAACUUUGCUUCUCGUUUCACAGGGUAUAUUCAUCUUUUGGCAAAAAACAGCAUAGUAUUG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACCUCACGCGGACAUAU--| UG U CU C UCG UUAUAU
GU AAGGAU AA UACCCUGU AA GAGAAGU U
CG UUUCUA UU AUGGGACA UU CUCUUCG C
GUUAUGAUACGACAAAAAA^ GU C AU C UG- UUUCAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Obi-Mir-10-P6_5p (predicted) |
mirBase accession | None |
Sequence |
0- CUUACCCUGUCAAUCGGAGAAGU -23
Get sequence
|
Star sequence |
Obi-Mir-10-P6_3p* (predicted) |
mirBase accession | None |
Sequence |
39- UUCUCGUUUCACAGGGUAUAUU -61
Get sequence
|