| MirGeneDB ID | Mgi-Mir-10-P6 |
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| Family name |
MIR-10 (all species) |
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| Seed |
UUACCCU |
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| Species |
Pacific oyster (Magallana gigas) |
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| MiRBase ID |
|
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| Paralogues |
Mgi-Mir-10-P1
Mgi-Mir-10-P2
Mgi-Mir-10-P3
Mgi-Mir-10-P5
|
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| Orthologues |
Adi-Mir-10
Agr-Mir-10-P6
Asp-Mir-10
Cte-Mir-10-P6
Eba-Mir-10-P6
Efe-Mir-10-P6
Esc-Mir-10-P6
Hru-Mir-10-P6
Lgi-Mir-10-P6
Lhy-Mir-10-P6
Mom-Mir-10-P6
Npo-Mir-10-P6
Nve-Mir-10
Obi-Mir-10-P6
Ofu-Mir-10-P6
Ovu-Mir-10-P6
Pve-Mir-10-P6
Rph-Mir-10-P6
War-Mir-10-P6
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| Node of Origin (locus) |
Neotrochozoa
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| Node of Origin (family) |
Eumetazoa
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Genome context
(CGI_GCA_000297895.1) |
scaffold1179: 770393-770460 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CAACGGUAUUUUGGAAUCUCGAUAUGUAACCUUACCCUGUAAAUCGGAGAAGUCUGAAUUUCCUCAGUCAGGUAACUUCUCGUUUCACAGGGUAUAUUUACCAAUCGGGACUGACAACACGGAGCCAG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CAACGGUAUUUUGGAAU-- AU CCU -| CG CUGAAUUUCC
CUCGAU GUAA UACCCUGU AAAU GAGAAGU \
GGGCUA CAUU AUGGGACA UUUG CUCUUCA U
GACCGAGGCACAACAGUCA AC UAU C^ -- AUGGACUGAC
120 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| A- |
D- |
D- |
Eg |
F- |
Gi |
He |
Ju |
L- |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
Ea |
Fe |
Ha |
La |
Ma |
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| Mature sequence |
Mgi-Mir-10-P6_5p |
| mirBase accession | None |
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| Sequence |
0- CUUACCCUGUAAAUCGGAGAAGU -23
Get sequence
|
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| Star sequence |
Mgi-Mir-10-P6_3p* |
| mirBase accession | None |
|---|
| Sequence |
46- UUCUCGUUUCACAGGGUAUAUU -68
Get sequence
|
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