MirGeneDB ID | Mgi-Mir-10-P6 |
Family name |
MIR-10 (all species) |
Seed |
UUACCCU |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
Mgi-Mir-10-P1
Mgi-Mir-10-P2
Mgi-Mir-10-P3
Mgi-Mir-10-P5
|
Orthologues |
Adi-Mir-10
Agr-Mir-10-P6
Asp-Mir-10
Cte-Mir-10-P6
Eba-Mir-10-P6
Efe-Mir-10-P6
Esc-Mir-10-P6
Hru-Mir-10-P6
Lgi-Mir-10-P6
Lhy-Mir-10-P6
Mom-Mir-10-P6
Npo-Mir-10-P6
Nve-Mir-10
Obi-Mir-10-P6
Ofu-Mir-10-P6
Ovu-Mir-10-P6
Pve-Mir-10-P6
Rph-Mir-10-P6
War-Mir-10-P6
|
Node of Origin (locus) |
Neotrochozoa
|
Node of Origin (family) |
Eumetazoa
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Genome context (CGI_GCA_000297895.1) |
scaffold1179: 770393-770460 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CAACGGUAUUUUGGAAUCUCGAUAUGUAACCUUACCCUGUAAAUCGGAGAAGUCUGAAUUUCCUCAGUCAGGUAACUUCUCGUUUCACAGGGUAUAUUUACCAAUCGGGACUGACAACACGGAGCCAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CAACGGUAUUUUGGAAU-- AU CCU -| CG CUGAAUUUCC
CUCGAU GUAA UACCCUGU AAAU GAGAAGU \
GGGCUA CAUU AUGGGACA UUUG CUCUUCA U
GACCGAGGCACAACAGUCA AC UAU C^ -- AUGGACUGAC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Mature sequence |
Mgi-Mir-10-P6_5p |
mirBase accession | None |
Sequence |
0- CUUACCCUGUAAAUCGGAGAAGU -23
Get sequence
|
Star sequence |
Mgi-Mir-10-P6_3p* |
mirBase accession | None |
Sequence |
46- UUCUCGUUUCACAGGGUAUAUU -68
Get sequence
|