MirGeneDB ID | Mgi-Mir-10-P5 |
Family name |
MIR-10 (all species) |
Seed |
UACCCUG |
Species |
Pacific oyster (Magallana gigas) |
MiRBase ID |
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Paralogues |
Mgi-Mir-10-P1
Mgi-Mir-10-P2
Mgi-Mir-10-P3
Mgi-Mir-10-P6
|
Orthologues |
Adi-Mir-10
Agr-Mir-10-P5
Asp-Mir-10
Cte-Mir-10-P5
Eba-Mir-10-P5
Efe-Mir-10-P5a
Efe-Mir-10-P5b
Hru-Mir-10-P5
Lgi-Mir-10-P5
Lhy-Mir-10-P5
Llo-Mir-10-P5a-v1
Llo-Mir-10-P5a-v2
Llo-Mir-10-P5b-v1
Llo-Mir-10-P5b-v2
Llo-Mir-10-P5b-v3
Mom-Mir-10-P5
Nve-Mir-10
Ofu-Mir-10-P5
Pau-Mir-10-P5
Pdu-Mir-10-P5
Pve-Mir-10-P5
Rph-Mir-10-P5
Snu-Mir-10-P5
War-Mir-10-P5
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Eumetazoa
|
Genome context (CGI_GCA_000297895.1) |
scaffold145: 700580-700637 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCAUCCAUACUCGUAAAAGCCAUGUCUUUUUUACCCUGUAGAACCGAGCGAGUGUAGCCGGUAACACAGCUCGUUUCUGAGGGUUCACAAGACUUUGGAUCAUGCUGCUGAUGUCUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UCAUCCAUACUCGUAAAAG- U-| UUUU G C GA UAGC
CCA GUCUU ACCCU UAGAA CGAGC GUG C
GGU CAGAA UGGGA GUCUU GCUCG CAC G
UGUCUGUAGUCGUCGUACUA UU^ CACU - U A- AAUG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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A- |
D- |
D- |
F- |
L- |
Ea |
Eg |
Fe |
Gi |
Ha |
He |
Ju |
La |
Ma |
Ma |
Ma |
Pe |
Re |
Sp |
Um |
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Mature sequence |
Mgi-Mir-10-P5_5p |
mirBase accession | None |
Sequence |
0- UUACCCUGUAGAACCGAGCGAGUG -24
Get sequence
|
Star sequence |
Mgi-Mir-10-P5_3p* |
mirBase accession | None |
Sequence |
36- CAGCUCGUUUCUGAGGGUUCAC -58
Get sequence
|