MirGeneDB ID | Cte-Mir-10-P5 |
Family name |
MIR-10 (all species) |
Seed |
UACCCUG |
Species |
Polychaete worm (Capitella teleta) |
MiRBase ID |
cte-mir-10b
|
Paralogues |
Cte-Mir-10-P1
Cte-Mir-10-P2
Cte-Mir-10-P3
Cte-Mir-10-P4
Cte-Mir-10-P6
Cte-Mir-10-P7
|
Orthologues |
Cgi-Mir-10-P5
Efe-Mir-10-P5a
Efe-Mir-10-P5b
Lgi-Mir-10-P5
Nve-Mir-10
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Capitella_teleta_v1.0) |
CAPTEscaffold_70: 411688-411746 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUCUACCUUCAAUUAUUGGUAACGUUGCCCUUACCCUGUCGAACCGAGCGAGUGAGAAAUUUACCCACCCCUCAGUUUGCAGGGUACAAGCAACUUGCUAUUUCUCACCACGGUAUGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCUACCUUCAAUUAUU---| C CCU U C CGA AGAAA
GGUAA GUUGC UACCCUG CGAAC GAG GUG \
UCGUU CAACG AUGGGAC GUUUG CUC CAC U
ACGUAUGGCACCACUCUUUA^ - AAC - A CC- CCAUU
110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
Unknown
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Cte-Mir-10-P5_5p |
mirBase accession | MIMAT0009510 |
Sequence |
0- UUACCCUGUCGAACCGAGCGAGUG -24
Get sequence
|
Star sequence |
Cte-Mir-10-P5_3p* (predicted) |
mirBase accession | None |
Sequence |
37- CCCCUCAGUUUGCAGGGUACAA -59
Get sequence
|