MirGeneDB ID | Llo-Mir-10-P5b-v3 |
Family name |
MIR-10 (all species) |
Seed |
GUACCCU |
Species |
Bootlace worm (Lineus longissimus) |
MiRBase ID |
|
Paralogues |
Llo-Mir-10-P1
Llo-Mir-10-P2
Llo-Mir-10-P3
Llo-Mir-10-P4-v1
Llo-Mir-10-P4-v2
Llo-Mir-10-P5a-v1
Llo-Mir-10-P5a-v2
Llo-Mir-10-P5b-v1
Llo-Mir-10-P5b-v2
|
Orthologues |
Adi-Mir-10
Agr-Mir-10-P5
Asp-Mir-10
Cte-Mir-10-P5
Eba-Mir-10-P5
Efe-Mir-10-P5b
Hru-Mir-10-P5
Lgi-Mir-10-P5
Lhy-Mir-10-P5
Mgi-Mir-10-P5
Mom-Mir-10-P5
Nve-Mir-10
Ofu-Mir-10-P5
Pau-Mir-10-P5
Pdu-Mir-10-P5
Pve-Mir-10-P5
Rph-Mir-10-P5
Snu-Mir-10-P5
War-Mir-10-P5
|
Node of Origin (locus) |
Lineidae
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCA_910592395.2_tnLinLong1) |
OU343004.1: 3931988-3932053 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCAGCAUGGUCAAAAUGUGGCGAGUUUCUGUGUACCCUGUAGAACCGAGCUAGUGUAUUUAGUUAGAAACUCACAAGCCAUUCUACAGUGUACAAAGAAACGUCUCGCUUCUAUCAACACCCUGAC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
CCAGCAUGGUCAAAAUGUG ---| G C CCGA A GUAUUUAG
GCGA GUUUCU UGUAC CUGUAGAA GCU GU U
CGCU CAAAGA ACAUG GACAUCUU CGA CA U
CAGUCCCACAACUAUCUU- CUG^ A U AC-- A CUCAAAGA
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Mature sequence |
Llo-Mir-10-P5b-v3_5p |
mirBase accession | None |
Sequence |
0- UGUACCCUGUAGAACCGAGCUAGU -24
Get sequence
|
Star sequence |
Llo-Mir-10-P5b-v3_3p* |
mirBase accession | None |
Sequence |
44- AAGCCAUUCUACAGUGUACAAA -66
Get sequence
|