MirGeneDB ID | Ofu-Mir-10-P5 |
Family name |
MIR-10 (all species) |
Seed |
UACCCUG |
Species |
Tubeworm (Owenia fusiformis) |
MiRBase ID |
|
Paralogues |
Ofu-Mir-10-P1
Ofu-Mir-10-P2
Ofu-Mir-10-P3
Ofu-Mir-10-P4
Ofu-Mir-10-P6
Ofu-Mir-10-P7
|
Orthologues |
Adi-Mir-10
Agr-Mir-10-P5
Asp-Mir-10
Cte-Mir-10-P5
Eba-Mir-10-P5
Efe-Mir-10-P5a
Efe-Mir-10-P5b
Hru-Mir-10-P5
Lgi-Mir-10-P5
Lhy-Mir-10-P5
Llo-Mir-10-P5a-v1
Llo-Mir-10-P5a-v2
Llo-Mir-10-P5b-v1
Llo-Mir-10-P5b-v2
Llo-Mir-10-P5b-v3
Mgi-Mir-10-P5
Mom-Mir-10-P5
Nve-Mir-10
Pau-Mir-10-P5
Pdu-Mir-10-P5
Pve-Mir-10-P5
Rph-Mir-10-P5
Snu-Mir-10-P5
War-Mir-10-P5
|
Node of Origin (locus) |
Lophotrochozoa
|
Node of Origin (family) |
Eumetazoa
|
Genome context (GCA_903813345.2_Owenia) |
CAIIXF020000001.1: 18062015-18062073 [+]
|
Precursor (pre-Mir +30nt flank) |
GGAUCGGUGAUCGUACUAAAUGGACUAUGUUUACCCUGUAGAACCGAGCGAGUGUAUAACCUUGUCACCACUCGUUUCUCGGGGUACUUGUAUUCUAUUCAUAGCAACAAAGAUAGAUC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGAUCGGUGAUCGUACUA--| C UU U CCGA GUAUAAC
AAUGGA UAUG UACCCUG AGAA GCGAGU C
UUAUCU AUGU AUGGGGC UCUU UGCUCA U
CUAGAUAGAAACAACGAUAC^ U UC - ---- CCACUGU
110 100 90 80 70 |
Deep sequencing |
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Mature sequence |
Ofu-Mir-10-P5_5p |
mirBase accession | None |
Sequence |
0- UUACCCUGUAGAACCGAGCGAGU -23
Get sequence
|
Star sequence |
Ofu-Mir-10-P5_3p* |
mirBase accession | None |
Sequence |
37- CCACUCGUUUCUCGGGGUACUU -59
Get sequence
|