Mir-10-P5a-v2

MirGeneDB ID

Llo-Mir-10-P5a-v2

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Bootlace worm (Lineus longissimus)

MiRBase ID

Paralogues

Llo-Mir-10-P1 Llo-Mir-10-P2 Llo-Mir-10-P3 Llo-Mir-10-P4-v1 Llo-Mir-10-P4-v2 Llo-Mir-10-P5a-v1 Llo-Mir-10-P5b-v1 Llo-Mir-10-P5b-v2 Llo-Mir-10-P5b-v3

Orthologues

Adi-Mir-10 Agr-Mir-10-P5 Asp-Mir-10 Cte-Mir-10-P5 Eba-Mir-10-P5 Efe-Mir-10-P5a Hru-Mir-10-P5 Lgi-Mir-10-P5 Lhy-Mir-10-P5 Mgi-Mir-10-P5 Mom-Mir-10-P5 Nve-Mir-10 Ofu-Mir-10-P5 Pau-Mir-10-P5 Pdu-Mir-10-P5 Pve-Mir-10-P5 Rph-Mir-10-P5 Snu-Mir-10-P5 War-Mir-10-P5

Node of Origin (locus)

Lineidae

Node of Origin (family)

Eumetazoa

Genome context
(GCA_910592395.2_tnLinLong1)

OU343004.1: 3860986-3861041 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GCAUUCCAGUUUAGAUCGAUAGACUGCCUAUACCCUGUAGAACCGAGCGAGUGAUAAACUGACCACCACUCGUUUCUCAGGGUACAUGUAAGCUGUUGAACACAUCAUUACCACAG

Get precursor sequence

Structure

        10          20        30        40        50          
GCAUUCCAGUUUAGAUC--|    AC   CUA       U    CCGA      GAUAAAC 
                   GAUAG  UGC   UACCCUG AGAA    GCGAGU       \
                   UUGUC  AUG   AUGGGAC UCUU    UGCUCA       U
GACACCAUUACUACACAAG^    GA   UAC       -    ----      CCACCAG 
    110       100        90        80             70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

No	No	No	No	No	No

Mature sequence

Llo-Mir-10-P5a-v2_5p

mirBase accession

None

Sequence

0- UACCCUGUAGAACCGAGCGAGU -22

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Star sequence

Llo-Mir-10-P5a-v2_3p*

mirBase accession

None

Sequence

35- CCACUCGUUUCUCAGGGUACA -56

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