MirGeneDB 3.0
MirGeneDB ID

Llo-Mir-10-P4-v1

Family name MIR-10 (all species)
Seed ACCCUGU
Species Bootlace worm (Lineus longissimus)
MiRBase ID
Paralogues Llo-Mir-10-P1  Llo-Mir-10-P2  Llo-Mir-10-P3  Llo-Mir-10-P4-v2  Llo-Mir-10-P5a-v1  Llo-Mir-10-P5a-v2  Llo-Mir-10-P5b-v1  Llo-Mir-10-P5b-v2  Llo-Mir-10-P5b-v3 
Orthologues Aae-Mir-10-P4  Adi-Mir-10  Aga-Mir-10-P4  Asp-Mir-10  Asu-Mir-10-P4  Ava-Mir-10-P4  Bge-Mir-10-P4  Bko-Mir-10-P4-o2  Bpl-Mir-10-P4  Csc-Mir-10-P4q  Csc-Mir-10-P4r  Cte-Mir-10-P4  Dan-Mir-10-P4  Dgr-Mir-10-P4  Dlo-Mir-10-P4-v1  Dlo-Mir-10-P4-v2  Dma-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Gpa-Mir-10-P4  Gsa-Mir-10-P4  Hme-Mir-10-P4  Isc-Mir-10-P4  Lan-Mir-10-P4d  Lan-Mir-10-P4e  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n  Nve-Mir-10  Ofu-Mir-10-P4  Pca-Mir-10-P4  Pcr-Mir-10-P4s1  Pcr-Mir-10-P4s2  Pcr-Mir-10-P4t  Pdu-Mir-10-P4  Pdu-Mir-10-P4-as  Snu-Mir-10-P4  Tca-Mir-10-P4  Tur-Mir-10-P4u  Tur-Mir-10-P4v  Tur-Mir-10-P4w 
Node of Origin (locus) Protostomia
Node of Origin (family) Eumetazoa
Genome context
(GCA_910592395.2_tnLinLong1)		 OU343004.1: 4085729-4085789 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUUUGUGCAAAUUCGACACAUUCUAAAUAUACCCUGUAGAUCCGGGUUUGUGUGUUCUUUUGAAAACAGAAGCUCGUUUCUACAGGUAUAUCGAGAACGUCCCUACACCAUAAAAUGACG
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Structure
        10          20        30        40        50        60
AUUUUGUGCAAAUUCGAC--| A    AA       C      UC       G  UGUUCU 
                    AC UUCU  AUAUACC UGUAGA  CGGGUUU UG      U
                    UG AAGA  UAUAUGG ACAUCU  GCUCGAA AC      U
GCAGUAAAAUACCACAUCCC^ C    GC       -      UU       G  AAAAGU 
 .       110       100        90         80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Sr Sr Sr Sr Sr Sr
Mature sequence

Llo-Mir-10-P4-v1_5p
mirBase accessionNone
Sequence 
0- UACCCUGUAGAUCCGGGUUUGUG -23
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Star sequence

Llo-Mir-10-P4-v1_3p*
mirBase accessionNone
Sequence 
39- GAAGCUCGUUUCUACAGGUAUA -61
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