MirGeneDB 3.0
MirGeneDB ID

Tca-Mir-10-P4

Family name MIR-10 (all species)
Seed AAGCUCG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-993
Paralogues Tca-Mir-10-P1-v1  Tca-Mir-10-P1-v2  Tca-Mir-10-P2  Tca-Mir-10-P3 
Orthologues Aae-Mir-10-P4  Adi-Mir-10  Aga-Mir-10-P4  Asp-Mir-10  Asu-Mir-10-P4  Ava-Mir-10-P4  Bge-Mir-10-P4  Bko-Mir-10-P4o1  Bko-Mir-10-P4o2  Bpl-Mir-10-P4  Csc-Mir-10-P4q  Csc-Mir-10-P4r  Cte-Mir-10-P4  Dan-Mir-10-P4  Dgr-Mir-10-P4  Dlo-Mir-10-P4-v1  Dlo-Mir-10-P4-v2  Dma-Mir-10-P4  Dme-Mir-10-P4  Dmo-Mir-10-P4  Dpu-Mir-10-P4  Dsi-Mir-10-P4  Dya-Mir-10-P4  Efe-Mir-10-P4a  Efe-Mir-10-P4b  Efe-Mir-10-P4c  Gpa-Mir-10-P4  Gsa-Mir-10-P4  Hme-Mir-10-P4  Isc-Mir-10-P4  Lan-Mir-10-P4d  Lan-Mir-10-P4e  Llo-Mir-10-P4-v1  Llo-Mir-10-P4-v2  Lpo-Mir-10-P4j  Lpo-Mir-10-P4k  Lpo-Mir-10-P4l  Lpo-Mir-10-P4m  Lpo-Mir-10-P4n  Nve-Mir-10  Ofu-Mir-10-P4  Pca-Mir-10-P4  Pcr-Mir-10-P4s1  Pcr-Mir-10-P4s2  Pcr-Mir-10-P4t  Pdu-Mir-10-P4  Pdu-Mir-10-P4-as  Snu-Mir-10-P4  Tur-Mir-10-P4u  Tur-Mir-10-P4v  Tur-Mir-10-P4w 
Node of Origin (locus) Protostomia
Node of Origin (family) Eumetazoa
Genome context
(Tcas5.2)		 LG2: 8499393-8499454 [-] Ensembl
Clustered miRNAs
(< 50kb from Mir-10-P4)		 Mir-10-P1-v2 LG2: 8460383-8460442 [+] Ensembl
Mir-10-P1-v1 LG2: 8460384-8460441 [+] Ensembl
Mir-10-P4 LG2: 8499393-8499454 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
CCGUUUUAUUUCAUAGGCACAUCCGUGAUCUACCCUGUAGAUCCGGGCUUUUGUAGAAUUUUUAGAUCAGAAGCUCGUCUCUACAGGUAUCUUACGGAUGGAAGACCUCUCAGCCGUCCACA
Get precursor sequence
Structure
        10           20        30        40        50        60
CCGUUUUAUUUCAUAGGCA---|        UC    C      UC          UAGAAU 
                      CAUCCGUGA  UACC UGUAGA  CGGGCUUUUG      U
                      GUAGGCAUU  AUGG ACAUCU  GCUCGAAGAC      U
ACACCUGCCGACUCUCCAGAAG^        CU    -      CU          UAGAUU 
120       110       100        90         80        70
Deep sequencing
Go to detailed chart
CommentThere is a second Drosha site -1 on both arms.
3' NTU No
MotifsNo
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Star sequence

Tca-Mir-10-P4_5p*
mirBase accessionMIMAT0019182
Sequence 
0- UACCCUGUAGAUCCGGGCUUUUG -23
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Mature sequence

Tca-Mir-10-P4_3p
mirBase accessionMIMAT0010094
Sequence 
39- GAAGCUCGUCUCUACAGGUAUCU -62
Get sequence