MirGeneDB ID | Bpl-Mir-10-P4 |
Family name |
MIR-10 (all species) |
Seed |
AAGCUCG |
Species |
Rotifer (Brachionus plicatilis) |
MiRBase ID |
|
Paralogues |
Bpl-Mir-10-P2
Bpl-Mir-10-P3
|
Orthologues |
Aae-Mir-10-P4
Asu-Mir-10-P4
Bge-Mir-10-P4
Csc-Mir-10-P4q
Csc-Mir-10-P4r
Cte-Mir-10-P4
Dan-Mir-10-P4
Dma-Mir-10-P4
Dme-Mir-10-P4
Dmo-Mir-10-P4
Dpu-Mir-10-P4
Dsi-Mir-10-P4
Dya-Mir-10-P4
Efe-Mir-10-P4a
Efe-Mir-10-P4b
Efe-Mir-10-P4c
Hme-Mir-10-P4
Isc-Mir-10-P4
Lan-Mir-10-P4d
Lan-Mir-10-P4e
Lpo-Mir-10-P4j
Lpo-Mir-10-P4k
Lpo-Mir-10-P4l
Lpo-Mir-10-P4m
Lpo-Mir-10-P4n
Nve-Mir-10
Tca-Mir-10-P4
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Bpl_ASM1027981) |
QEOQ01000707.1: 752802-752861 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUUUGGAAAAUAAAAGUUUCUUUGUAAUUACCUUCGUAAAACGAGAUUUUGUAGUUUAUGAAUUCUCGAAAGCUCGUUGAUACGAAGGUUAAAUACAAGAGUUCUUAAGCAACAAUUUUA
Get precursor sequence
|
Structure | 10 20 30 40 50
AUUUGGAAAAUAAAAGU-- U A - A-| A UAGUUUA
UUC UUGUA UU ACCUUCGUA AACGAG UUUUG \
GAG AACAU AA UGGAAGCAU UUGCUC AAAGC U
AUUUUAACAACGAAUUCUU - A U AG^ G UCUUAAG
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | No |
Tissue expression
|
|
Star sequence |
Bpl-Mir-10-P4_5p* |
mirBase accession | None |
Sequence |
0- CCUUCGUAAAACGAGAUUUUG -21
Get sequence
|
Mature sequence |
Bpl-Mir-10-P4_3p |
mirBase accession | None |
Sequence |
38- AAAGCUCGUUGAUACGAAGGUU -60
Get sequence
|