MirGeneDB ID | Dmo-Mir-10-P4 |
Family name |
MIR-10 (all species) |
Seed |
AAGCUCG |
Species |
Fruit fly (Drosophila mojavensis) |
MiRBase ID |
|
Paralogues |
Dmo-Mir-10-P1
Dmo-Mir-10-P2
Dmo-Mir-10-P3
|
Orthologues |
Aae-Mir-10-P4
Adi-Mir-10
Aga-Mir-10-P4
Asp-Mir-10
Asu-Mir-10-P4
Ava-Mir-10-P4
Bge-Mir-10-P4
Bko-Mir-10-P4o1
Bko-Mir-10-P4o2
Bpl-Mir-10-P4
Csc-Mir-10-P4q
Csc-Mir-10-P4r
Cte-Mir-10-P4
Dan-Mir-10-P4
Dgr-Mir-10-P4
Dlo-Mir-10-P4-v1
Dlo-Mir-10-P4-v2
Dma-Mir-10-P4
Dme-Mir-10-P4
Dpu-Mir-10-P4
Dsi-Mir-10-P4
Dya-Mir-10-P4
Efe-Mir-10-P4a
Efe-Mir-10-P4b
Efe-Mir-10-P4c
Gpa-Mir-10-P4
Gsa-Mir-10-P4
Hme-Mir-10-P4
Isc-Mir-10-P4
Lan-Mir-10-P4d
Lan-Mir-10-P4e
Llo-Mir-10-P4-v1
Llo-Mir-10-P4-v2
Lpo-Mir-10-P4j
Lpo-Mir-10-P4k
Lpo-Mir-10-P4l
Lpo-Mir-10-P4m
Lpo-Mir-10-P4n
Nve-Mir-10
Ofu-Mir-10-P4
Pca-Mir-10-P4
Pcr-Mir-10-P4s1
Pcr-Mir-10-P4s2
Pcr-Mir-10-P4t
Pdu-Mir-10-P4
Pdu-Mir-10-P4-as
Snu-Mir-10-P4
Tca-Mir-10-P4
Tur-Mir-10-P4u
Tur-Mir-10-P4v
Tur-Mir-10-P4w
|
Node of Origin (locus) |
Protostomia
|
Node of Origin (family) |
Eumetazoa
|
Genome context (Dmoj_caf1) |
scaffold_6540: 16546199-16546279 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UCAGUGCUAAACAGAAACGCUCCCGUGACCUACCCUGUAGUUCCGGGCUUUUGUUUAUAGUGCAUACGAAUGCCAUUGUCAAUUAUCAGAAGCUCGUCUCUACAGGUAUCUCACAGGGUAGAAAGAAACAACUCAAACUCA
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UCAGUGCUAAACAGAAACG- - -| CC C UUC UUUAUAGUGCAUACGA
CU CCC GUGA UACC UGUAG CGGGCUUUUG \
GA GGG CACU AUGG ACAUC GCUCGAAGAC A
ACUCAAACUCAACAAAGAAA U A^ CU - UCU UAUUAACUGUUACCGU
. 130 120 110 100 90 80 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Drosha cut -1 on the 5p arm. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Dmo-Mir-10-P4_5p* |
mirBase accession | None |
Sequence |
0- UACCCUGUAGUUCCGGGCUUUUG -23
Get sequence
|
Mature sequence |
Dmo-Mir-10-P4_3p |
mirBase accession | None |
Sequence |
58- GAAGCUCGUCUCUACAGGUAUCU -81
Get sequence
|