Mir-10-P4u

MirGeneDB ID

Tur-Mir-10-P4u

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Two-spotted spider mite (Tetranychus urticae)

MiRBase ID

tur-mir-993b

Paralogues

Tur-Mir-10-P1y Tur-Mir-10-P1z-v1 Tur-Mir-10-P1z-v2 Tur-Mir-10-P2 Tur-Mir-10-P4v Tur-Mir-10-P4w

Orthologues

Aae-Mir-10-P4 Adi-Mir-10 Aga-Mir-10-P4 Asp-Mir-10 Asu-Mir-10-P4 Ava-Mir-10-P4 Bge-Mir-10-P4 Bko-Mir-10-P4-o2 Bpl-Mir-10-P4 Cte-Mir-10-P4 Dan-Mir-10-P4 Dgr-Mir-10-P4 Dlo-Mir-10-P4-v1 Dlo-Mir-10-P4-v2 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Gpa-Mir-10-P4 Gsa-Mir-10-P4 Hme-Mir-10-P4 Isc-Mir-10-P4 Llo-Mir-10-P4-v1 Llo-Mir-10-P4-v2 Nve-Mir-10 Ofu-Mir-10-P4 Pca-Mir-10-P4 Pdu-Mir-10-P4 Pdu-Mir-10-P4-as Snu-Mir-10-P4 Tca-Mir-10-P4

Node of Origin (locus)

T. urticae

Node of Origin (family)

Eumetazoa

Genome context
(GCA_000239435.1_ASM23943v1_genomic_TUR_traces)

HE587311.1: 2466151-2466214 [-] Ensembl

Clustered miRNAs
(< 50kb from Mir-10-P4u)

Mir-10-P4w HE587311.1: 2464812-2464873 [-] Ensembl
Mir-10-P4v HE587311.1: 2465365-2465427 [-] Ensembl
Mir-10-P4u HE587311.1: 2466151-2466214 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

GCCUUUCAAUGGGUAAAGUCGUUAGCGAGUUACCCUGUGAACCCGGGCUUUUGUAGACCUCUUCAGAGUCAGAAGCUCGUUUUUACAGGUUUUCUUGAAAAUGAUCAUUUCUCGUCGGACAAGU

Get precursor sequence

Structure

        10          20        30        40        50        60 
GCCUUUCAAUGGGUAAA--|     AG    UUAC        CC          UAGACCU 
                   GUCGUU  CGAG    CCUGUGAA  CGGGCUUUUG       C
                   UAGUAA  GUUC    GGACAUUU  GCUCGAAGAC       U
UGAACAGGCUGCUCUUUAC^     AA    UUUU        UU          UGAGACU 
  120       110       100        90        80        70