Mir-10-P4-v1

MirGeneDB ID

Dlo-Mir-10-P4-v1

Family name

MIR-10 (all species)

Seed

ACCCUGU

Species

Braconid wasp (Diachasmimorpha longicaudata)

MiRBase ID

Paralogues

Dlo-Mir-10-P1-v1 Dlo-Mir-10-P1-v2 Dlo-Mir-10-P2 Dlo-Mir-10-P3 Dlo-Mir-10-P4-v2

Orthologues

Aae-Mir-10-P4 Adi-Mir-10 Aga-Mir-10-P4 Asp-Mir-10 Asu-Mir-10-P4 Ava-Mir-10-P4 Bge-Mir-10-P4 Bko-Mir-10-P4-o2 Bpl-Mir-10-P4 Csc-Mir-10-P4q Csc-Mir-10-P4r Cte-Mir-10-P4 Dan-Mir-10-P4 Dgr-Mir-10-P4 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Efe-Mir-10-P4a Efe-Mir-10-P4b Efe-Mir-10-P4c Gpa-Mir-10-P4 Gsa-Mir-10-P4 Hme-Mir-10-P4 Isc-Mir-10-P4 Lan-Mir-10-P4d Lan-Mir-10-P4e Llo-Mir-10-P4-v1 Llo-Mir-10-P4-v2 Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n Nve-Mir-10 Ofu-Mir-10-P4 Pca-Mir-10-P4 Pcr-Mir-10-P4s1 Pcr-Mir-10-P4s2 Pcr-Mir-10-P4t Pdu-Mir-10-P4 Pdu-Mir-10-P4-as Snu-Mir-10-P4 Tca-Mir-10-P4 Tur-Mir-10-P4u Tur-Mir-10-P4v Tur-Mir-10-P4w

Node of Origin (locus)

Protostomia

Node of Origin (family)

Eumetazoa

Genome context
(GCF_034640455.1_iyDiaLong2_genomic)

NC_087226.1: 5616549-5616611 [-] Ensembl

Precursor
(pre-Mir +30nt flank)

AAAUUGCAUAUGAUAGGCACAUUCGUGAUCUACCCUGUAGAUCCGGGCUUUUGUAGAAUUGUAGAUAUCAGAAGCUCGUCUUUACAGGUAUCUUACGGAUGAUAUGCCACGCAACUGUAGUUU

Get precursor sequence

Structure

        10           20        30        40        50        60 
AAAUUGCAUAUGAUAGGCA---|        UC    C      UC          UAGAAUU 
                      CAUUCGUGA  UACC UGUAGA  CGGGCUUUUG       \
                      GUAGGCAUU  AUGG ACAUUU  GCUCGAAGAC       G
UUUGAUGUCAACGCACCGUAUA^        CU    -      CU          UAUAGAU 
 120       110       100        90         80        70

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Sr	Sr

Mature sequence

Dlo-Mir-10-P4-v1_5p

mirBase accession

None

Sequence

0- UACCCUGUAGAUCCGGGCUUUUG -23

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Co-mature sequence

Dlo-Mir-10-P4-v1_3p

mirBase accession

None

Sequence

40- GAAGCUCGUCUUUACAGGUAUCU -63

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